Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02163 ATGCTAATAAAGTCGCGAGCTTCACTCTTGTTTTCCATTTCAATTCCAAAAGCTGAATGTATTGAGACTCACTCGAGTATAGCTTTGTCTAAAAGGCTAATCCCACACCACATTCACACCAAATCATTCATCGAAAATTCTAAGATGAAGATGATTAACATTCTTTTCCTTCTCGCTCTTCTCTCGTATACTTCCCATGCTTCTGTCAATGATTTCTGCGTAGCAGACCTAAAGGGTCCAGATAGCCCTTCAGGCTATCAGTGCAAGCCACCTAACACAGTGACAGTGGATGATTTTGTATTCAGTGGCTTTGTAGCTGGAAACACCACTGGCGGTTTCAATGCTGCCGTAACCCCCGCATTTGTCAATGAACTTCCAGGTGTGAATGGTCTTGGTTTATCTGTAGCACGGTTAGACATAGCCAAAGGTGGAGCTGTTCCAATGCACTCACATGCTGGTGCCAGTGAAATACTCATGATGGTGAAGGGTCAAATCACTGCTGGCTTTATAACACCTGCTGGAGTTTATCAGAAGACACTGAAACCAGGAGATGTTATGGTTATCCCACAAGGACTCATGCATTTCCAAGCAAATTCTGGTAAGGGAAAAGCCACTGCTTATCTTGCTTTCAGTAGTCCAAGCCCAGGAGCTCAACTACTTGACCTTCTTTTATTTGGCAACAACTTGCCTTCTGAGTTGATTGCACAAACTACTTTGCTTGATTATGCACAAGTGAAGAAGCTCAAGTATCGTTTTGGTGGCAGAGAATAG 771 0.4319 MLIKSRASLLFSISIPKAECIETHSSIALSKRLIPHHIHTKSFIENSKMKMINILFLLALLSYTSHASVNDFCVADLKGPDSPSGYQCKPPNTVTVDDFVFSGFVAGNTTGGFNAAVTPAFVNELPGVNGLGLSVARLDIAKGGAVPMHSHAGASEILMMVKGQITAGFITPAGVYQKTLKPGDVMVIPQGLMHFQANSGKGKATAYLAFSSPSPGAQLLDLLLFGNNLPSELIAQTTLLDYAQVKKLKYRFGGRE 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02163 256 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 62 249 - -
Spst4g02163 256 Pfam Cupin 107 245 IPR006045 -
Spst4g02163 256 SUPERFAMILY RmlC-like cupins 68 251 IPR011051 -
Spst4g02163 256 PRINTS Germin signature 211 226 IPR001929 GO:0030145
Spst4g02163 256 PRINTS Germin signature 178 198 IPR001929 GO:0030145
Spst4g02163 256 PRINTS Germin signature 149 169 IPR001929 GO:0030145
Spst4g02163 256 CDD cupin_OxOx 65 252 IPR001929 GO:0030145
Spst4g02163 256 FunFam Auxin-binding protein ABP19a 66 255 - -
Spst4g02163 256 Gene3D Jelly Rolls 66 255 IPR014710 -
Spst4g02163 256 SMART Cupin_1_3 102 246 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02163 Spst-Chr4 62358633 62361580 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02163 49 254 Miscellaneous Gene Families AT5G20630 59.330 3.76e-80 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02163 - - gmx:100813853 351.288