Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02162 ATGCTGCTGTCATATGATTTCTGTGTAGCAGACCTACAGGGTCCTGATAGCCCTTCGGGCTATCAGTGCAAGCCACCTAAGACACTCACGGTGGATGACTTTGTCTTCTCCAGCTTTGTAGCTGGAAACACCACAAACATTTTCAAGGCTGTATTAACCTCTGCATTTGTTTATGATTTCCCAGGTGTGAATGGCCTTGGTTTATCTGTTGGACGATTAGACATAGAAAAAGGTTTTATGACGCCATTTTCACTTTTTACCAAGACACTGAAACCAGGAGATGTTATGGTTATTCCACAAGGACAATTGCATTTTCAAGTGAATTCTGGAAACAGAAGAGCCACTGCTTTTCTTGCTTGCAGTAGCCCAAACCGTGAAGCACAACTACTTGATCTACTATTGTTTAGTAATAGCTTACCTTCTGACTTGGTTGCACAAACTACCTTCCTTGATGTTGCACAGGTGAAGAAGCTTAAGGTTCGTTTTGGTGGCAGAGGTTAA 501 0.4232 MLLSYDFCVADLQGPDSPSGYQCKPPKTLTVDDFVFSSFVAGNTTNIFKAVLTSAFVYDFPGVNGLGLSVGRLDIEKGFMTPFSLFTKTLKPGDVMVIPQGQLHFQVNSGNRRATAFLACSSPNREAQLLDLLLFSNSLPSDLVAQTTFLDVAQVKKLKVRFGGRG 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02162 166 PRINTS Germin signature 121 136 IPR001929 GO:0030145
Spst4g02162 166 PRINTS Germin signature 88 108 IPR001929 GO:0030145
Spst4g02162 166 Pfam Cupin 83 156 IPR006045 -
Spst4g02162 166 Gene3D Jelly Rolls 3 82 IPR014710 -
Spst4g02162 166 Gene3D Jelly Rolls 83 165 IPR014710 -
Spst4g02162 166 SMART Cupin_1_3 37 156 IPR006045 -
Spst4g02162 166 SUPERFAMILY RmlC-like cupins 3 159 IPR011051 -
Spst4g02162 166 CDD cupin_OxOx 6 162 IPR001929 GO:0030145
Spst4g02162 166 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 76 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02162 Spst-Chr4 62351311 62351886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02162 6 166 Miscellaneous Gene Families AT1G72610 45.745 6.83e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02162 - - gmx:100818105 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02162 4 62351311 62351886 Spst4g02162 4 62351311 62351886 ECH