Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02135 ATGAATGGGAAAGTACAAGTAGTCAACCTGACCCCTTTTGTACACGCGTTCATCCGACACAAGCTGATGGGAATAGCGTTCAGCCGCGATGCCAGGGTGTTTCCAAGTGGAACCTCACACTGGTTTGCATGTCCTAATAACAGCTTACGCACTTTAAGCTCATTCATCCCCCTTACACCTACCCTTAGTCCTCCCACAATGAAGTTCCTCAGCTGGATGCAAAATAAACTTGGTGGAAAACAAGACAACAGAAGACCAAATACACATACAACTAATACATCTCATGCAAAACAAGAACCTAGAGAGGAATTCAGCGATTGGCCTCATGGTTTACTAGCAATTGGAACATTTGGAAATAACAGTGAAATCAAAGAAAACTTAGATGACCAAAATACACAAGAGGATCCATCCTCATCAGAGGAAATAGTAGACTTCACTCCTGAAGAAATTGGGAATCTACAGAAGGTGTTAACCAAACTCCTGAGACGAAAACCAAATGTGGAAAAGGAAATTTCTGAGCTTCCTCTGGACAGATTTCTTAACTGCCCTTCAAGCTTGGAGGTTGATAGGAGAATCAGTAATGCGCTATGCACTGAATCAGAAGATAAAGAAGAAGATATTGAGAAGACATTGAGTGTGATAATCGATAAATGCAAAGACATTTATGCAGATAGCAGAAAGAAAGCAATTGGGAAGAAATCCATTTCTTTCCTTCTGAAGAAGATATTTGTTTGTAGAAGTGGATTTGCCCCAACACCTAGCCTTAGAGATACCCTTCAAGAGTCAAGAATGGAGAAGCTTTTGAGGACAATGCTTCACAAGAAAATTTACACCCAAAACTCTTCTCGGGCATCAATGATGAAGAAGTGCATAGAGGACAAGAAGATGACAAGGAAGACGAATGAGGATGAATCAGATGAGAGAAGTGGTGATGGCAGTAAATGGGTCAAGACTGATTCTGAATGTAAGTTGCAATATTGTGCTAGAGATATAAACCTGCTTCCTATTTTTACTACCTCTATTAGTAGCTGTTCAGATGGAAGCAAAAGATTGAAGTTATTGGGGTGCAGTAGGAGAGTTGCGTTGGCGCTGGCAATGCCATTGGTGTGGTCATGTTCAAAAGCAGTGAAAACAGTTGGGTGTGAGAAACTTCTTGTATTGCTGAGAGATGGTAGAAAGCTCATGGGGACACTTCGCTCTTTTGATCAATTTGCTAATGCAGTCCTTGAGGGTGCCTGTGAGAGGGTTATTGTTGGTGATCTGTATTGTGATATCCCTTTGGGTCTCTATGTGATCCGTGGGGAAAATGTTGTTCTAATTGGTGAGCTGGACTTGGAGAGGGAGGAACTTCCTGAACACATGACTCGTGTTTCTACAGCAGAAATCAAGAGGGTAAATATTCCCAAATTGTTTCTTCATTTAATTGATGCAATTGATGTGTATTTGTCATGGTATGGTAACACAAGTGTTGTGGGTTCATTGGAAATGCAAGTATCTTATGCGACGAAGGCAATCGCAACTGCCTTACGTGTTGTAGGTTTAAACTGCGTCCTAAGCATGCATCCTTGTCAAGGGTGTTCTGATGAGTTCCTAACGTTGAATCCAGCTAGTAGGGGAGGATGGTTGTGGCAAAATAACTTGATTGAGATAAGCCCTTCCATATCCTTCTCTTCCAGGCCATATTCCTTGTCCTGGGCACAGAAAGCAGAAAGAGAGGCTTCAGATCTGAAAGGAACTATGAGGAAAAGAATGGAATTTCTTGACTTTGATTAG 1773 0.4157 MNGKVQVVNLTPFVHAFIRHKLMGIAFSRDARVFPSGTSHWFACPNNSLRTLSSFIPLTPTLSPPTMKFLSWMQNKLGGKQDNRRPNTHTTNTSHAKQEPREEFSDWPHGLLAIGTFGNNSEIKENLDDQNTQEDPSSSEEIVDFTPEEIGNLQKVLTKLLRRKPNVEKEISELPLDRFLNCPSSLEVDRRISNALCTESEDKEEDIEKTLSVIIDKCKDIYADSRKKAIGKKSISFLLKKIFVCRSGFAPTPSLRDTLQESRMEKLLRTMLHKKIYTQNSSRASMMKKCIEDKKMTRKTNEDESDERSGDGSKWVKTDSECKLQYCARDINLLPIFTTSISSCSDGSKRLKLLGCSRRVALALAMPLVWSCSKAVKTVGCEKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLEREELPEHMTRVSTAEIKRVNIPKLFLHLIDAIDVYLSWYGNTSVVGSLEMQVSYATKAIATALRVVGLNCVLSMHPCQGCSDEFLTLNPASRGGWLWQNNLIEISPSISFSSRPYSLSWAQKAEREASDLKGTMRKRMEFLDFD 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02135 590 FunFam U6 snRNA-associated Sm-like protein LSm1 373 470 - -
Spst4g02135 590 SMART Sm3 373 442 IPR001163 -
Spst4g02135 590 Pfam LSM domain 382 441 IPR001163 -
Spst4g02135 590 MobiDBLite consensus disorder prediction 295 315 - -
Spst4g02135 590 MobiDBLite consensus disorder prediction 122 142 - -
Spst4g02135 590 Gene3D - 378 469 - -
Spst4g02135 590 MobiDBLite consensus disorder prediction 77 102 - -
Spst4g02135 590 PANTHER OS03G0406300 PROTEIN 67 322 IPR044683 GO:0009630|GO:0040008
Spst4g02135 590 ProSiteProfiles Sm domain profile. 370 446 IPR047575 GO:0003723
Spst4g02135 590 CDD LSm1 383 443 IPR034104 GO:0000956
Spst4g02135 590 MobiDBLite consensus disorder prediction 77 94 - -
Spst4g02135 590 MobiDBLite consensus disorder prediction 122 140 - -
Spst4g02135 590 SUPERFAMILY Sm-like ribonucleoproteins 382 444 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02135 Spst-Chr4 62131295 62140210 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02135 - - gsj:114417729 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02135 4 62131295 62140210 Spst4g02135 4 62131295 62140210 ECH