Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02090 ATGCTGACACTGAACAAGTTAATGGCTGAAAAGAGCCACGCTAGAGACACTCACTCCATTCCCATTTCTCTCACATCACCGACCCCAACAAGTTCAATTTCACTGTGCCATGCTATGGACCTCCCCAGCCACAAATTCTTCCAATCCCCATCTGCATTGGCAGTGGCAGTGGCACCACATGGGGAAGCACTCTCTGAGAGCAACATGAGCATGTATGGGAAAAGCAAAGACAACCCTTTTGCAGATGACTTCCCTGACCCACTTTGCAAGCTCAACCTGAAGGAAACCTCTGAGTTTGTCAAGTCATTGCCTATGCCTAGTGGCAGAGCTGAAAGCAGAGGCCACTCTGTTTCACAACAGAAGAGACTACTAGAGGCTCCCTCCACTCCTGGGAGACCAGTTTTCACCTTCAACTCTGGCCTTCCAAGAAAGAGCTTCCCTTCCAAGTGGGATGATGCAGAGAAATGGCTCATGAGCACTTCTTGCCATGACTCACCTGCTCACAACAACACTCCCAAGGTTTCAGTCTCAGACTCCTCGAAGGTTGCAACCAGACAACAATGTGAAGATGTTGGATTTAAGCATCAAATGGAAAATTTCTCGGAGAAATCAAGGGTCACAGAAGAAAGGGTGTCCAAAGCTGTCCCAAACTTCCACTGGTCTCCTTCTTTGGACCACCACCATAACGCACTCAGCGCTTTCCATGGTGTTAAAGAAATCGTACTCAAAGATAAGTTCACGGACAGCATAGAGCCTATTTTGCCAAATTTGAGATACTCCGAGCCGGCCAAGGAAGGGTTCTTGTTTAGGAACCAAGGTGGTGAGGCAATGCAAGATGCTTGCACAGAAGTGGTTCAACATAGAGATATTGGGACTGAGATGACTCCTTTGGGAAGTTCCACAACTTCAAGATGCCACACCCCAGTTAAGATTTCATCACCTCCTCGCCACAACACTCCTGCAAGTAGGTCAGGACCATTAGCCTTGGCTGGCACTGCATGCACTCTTGATGTCATTCAGCTGGAGGAGTGCCATTTTTCAAAACTGCAACTAGGAACACAGTACGATATAGTCACTTCAAATTGGAGCTCAAGTGAAGAGGAAGAAAAAGAAATATCAAAAAGCTTGAGGCATAATGGTAGCCACAAAGCTGATTCAGACTGCATAGCTGCTTCATGGGAAGAAGAGGAGAAGACCAAGTGTTGTTTAAGGTATCAGAGAGAAGAAGCAAAAATCCAAGCTTGGGTAAACCTCCAAAGTGCTAAAGCAGAGGCCAGGTCAAGAAAGCTTGAGGTGAAGATACAGAAGATGAGATCAAACCTAGAAGAGAAGTTGATGAAGAGGATGTCAGTGGTTCACCGGAAGGCTGAGGAGTGGAGAGCAGAAGCAAGACAACAACATTTGGATCAAATCCAGAAAGCCACTGAACAAGCTCAGAAGATGATTCATAAACATAACTCACACTTTTCAAAGCCAAGTTCATGTGGGTGCTTCCCTTGCAATATCAACCATCATTGA 1518 0.4618 MLTLNKLMAEKSHARDTHSIPISLTSPTPTSSISLCHAMDLPSHKFFQSPSALAVAVAPHGEALSESNMSMYGKSKDNPFADDFPDPLCKLNLKETSEFVKSLPMPSGRAESRGHSVSQQKRLLEAPSTPGRPVFTFNSGLPRKSFPSKWDDAEKWLMSTSCHDSPAHNNTPKVSVSDSSKVATRQQCEDVGFKHQMENFSEKSRVTEERVSKAVPNFHWSPSLDHHHNALSAFHGVKEIVLKDKFTDSIEPILPNLRYSEPAKEGFLFRNQGGEAMQDACTEVVQHRDIGTEMTPLGSSTTSRCHTPVKISSPPRHNTPASRSGPLALAGTACTLDVIQLEECHFSKLQLGTQYDIVTSNWSSSEEEEKEISKSLRHNGSHKADSDCIAASWEEEEKTKCCLRYQREEAKIQAWVNLQSAKAEARSRKLEVKIQKMRSNLEEKLMKRMSVVHRKAEEWRAEARQQHLDQIQKATEQAQKMIHKHNSHFSKPSSCGCFPCNINHH 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02090 505 Coils Coil 420 447 - -
Spst4g02090 505 MobiDBLite consensus disorder prediction 293 320 - -
Spst4g02090 505 MobiDBLite consensus disorder prediction 103 138 - -
Spst4g02090 505 PANTHER OS02G0116800 PROTEIN 112 498 - -
Spst4g02090 505 Coils Coil 464 484 - -
Spst4g02090 505 MobiDBLite consensus disorder prediction 293 323 - -
Spst4g02090 505 Pfam Remorin, C-terminal region 390 486 IPR005516 -
Spst4g02090 505 CDD UDM1_RNF168_RNF169-like 424 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02090 Spst-Chr4 61714408 61720191 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02090 - - gmx:100776089 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02090 4 61714408 61720191 Spst4g02090 4 61714408 61720191 ECH