Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02089 ATGGCTTCTGATTCCCCTTTCCCTGTCACCGCTCGAAACATCAATCCCAAGGTTTTGAAATGTGAGTACGCTGTTAGAGGAGAGGTTGTCACACTTGCTCAGAATTTGCAGAAGGATTTAAAGGCCAATCCCGGTTCTCATCCATTTGATGAGATACTTTACTGCAACATTGGAAATCCTCAGTCTCTTGGCCAGCCTCCAATAACCTTTTTCCGAGAGGTTCTTGCATTATGCGATCATCCAGCTATATTGGACAAAAGTGAAACACATGGTTTGTTCAGTGCTGATGCAATAGAACGAGCTTGGCAGATTGTGGAACAGATTCCTGGTAGGGCAACTGGTGCCTATAGCCACAGTCAGGGTATCAAGGGTTTGCGTGATACAATAGCTGCTGGGATTCAAGAGCGTGATGGTTTTCCTGCCAATCCGGATGACATTTTCATGACAGATGGTGCAAGCCCTGCAGTCCATAATATGATGCAATTACTCATTAGATCAGAAAATGATGGTATTCTGTGTCCCATTCCACAGTACCCTCTGTACTCGGCCTCAATTGACCTCCATGGTGGTTTCCTGGTACCTTATTATCTGGATGAAGCAACAGGTTGGGGGTTGGAAATACCTGAACTCAAGAAGCAATTGGAGGCTGCCAAGTCTAAGGGAATCAATGTTAGGGCTTTAGTTGTTATAAATCCAGGCAATCCAACGGGGCAGGTTCTTTCTGAGGAGAATCAGCGGGATATAGTAGAATTTTGCAAGAGAGAAGGTTTGGTTCTTTTAGCTGACGAGGTATATCAAGAAAATGTTTATGTTCCTGACAAGAAGTTTCACTCATTCAAGAAGGTATCTCGGTCCATGGGATATGGTGAGAATGACATCACCTTAGTATCATTTCAATCAGTCTCTAAAGGTTACCATGGGGAGTGTGGGAAACGAGGAGGGTACATGGAGGTGACTGGCTTTTCTGCAGAAGTGAGGGAACAAATATATAAAGTGGCATCTGTCAACCTTTGCTCTAATATCTCTGGTCAAATTCTTGCAAGCTTGGTCATGAGTCCACCTAAGGTTGGAGACGAGTCCTATGAATCATTCATGGCTGAGAAGGAAAATATTTTGTCATCGCTTGCAAGGCGTGCAAAGACACTAGAAGATGCAATCAACAAATTAGAGGGTGTAACATGCAACAAAGCAGAAGGGGCAATGTATCTGTTCCCCCAAATTCGCCTGTCCCAAAAGGCTATCAAAGCTGCAGGGGATGAAAATACTGCACCTGATAACTTCTATTGCAAGCGCTTGCTTAATGCCACAGGAGTAGTAGTTGTTCCTGGTTCTGGTTTTGGACAGGTTCCTGGCACATGGCATTTCAGGTGCACCATTTTGCCTCCAGAAGAAAAGATTCCAGCCATTGTCTCCCGTTTGACAGAGTTCCATGAAAACTTCATGAATGAGTTCCGTGACTAA 1461 0.4428 MASDSPFPVTARNINPKVLKCEYAVRGEVVTLAQNLQKDLKANPGSHPFDEILYCNIGNPQSLGQPPITFFREVLALCDHPAILDKSETHGLFSADAIERAWQIVEQIPGRATGAYSHSQGIKGLRDTIAAGIQERDGFPANPDDIFMTDGASPAVHNMMQLLIRSENDGILCPIPQYPLYSASIDLHGGFLVPYYLDEATGWGLEIPELKKQLEAAKSKGINVRALVVINPGNPTGQVLSEENQRDIVEFCKREGLVLLADEVYQENVYVPDKKFHSFKKVSRSMGYGENDITLVSFQSVSKGYHGECGKRGGYMEVTGFSAEVREQIYKVASVNLCSNISGQILASLVMSPPKVGDESYESFMAEKENILSSLARRAKTLEDAINKLEGVTCNKAEGAMYLFPQIRLSQKAIKAAGDENTAPDNFYCKRLLNATGVVVVPGSGFGQVPGTWHFRCTILPPEEKIPAIVSRLTEFHENFMNEFRD 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02089 486 Gene3D - 63 113 - -
Spst4g02089 486 Gene3D Aspartate Aminotransferase, domain 1 13 484 IPR015422 GO:0003824
Spst4g02089 486 FunFam alanine aminotransferase 2 114 360 - -
Spst4g02089 486 CDD AAT_like 99 475 - -
Spst4g02089 486 Coils Coil 365 392 - -
Spst4g02089 486 FunFam Alanine aminotransferase 2 63 113 - -
Spst4g02089 486 Pfam Aminotransferase class I and II 111 469 IPR004839 GO:0009058|GO:0030170
Spst4g02089 486 PANTHER ALANINE AMINOTRANSFERASE 7 485 IPR045088 GO:0008483
Spst4g02089 486 FunFam Alanine aminotransferase 2 358 484 - -
Spst4g02089 486 SUPERFAMILY PLP-dependent transferases 11 478 IPR015424 -
Spst4g02089 486 Gene3D - 114 360 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02089 Spst-Chr4 61706942 61712319 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02089 K00814 - gmx:100127413 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02089 4 61706942 61712319 Spst4g02089 4 61706942 61712319 ECH