Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02043 ATGTCTTTCACTGCAACCAAGTTTGCACCGTCTCCTCTCCCTCTCAATTCCACCACCCCCAGATCCAATGACAAGCCTCTCTCTTTCTCCTTCGATCACTCCAAACCCAACCCTTCTTCCTCTTTCCTTGGATCCACTCGCAAGCTTCTTCGCTTCAATGCTCTTGCTAAGCCTCATGCTCGTGCTCGTGCTTCTTCCCCTGTTGCTGCTGTTCTTCTCCAACAAACCTCCAATCTGCTTGTTACTAAAGAGGAAGGGTTGGAGCTCTATGAAGACATGATACTAGGGAGGTTCTTCGAGGACAAGTGTGCCGAGATGTATTATAGGGGCAAAATGTTTGGTTTTGTTCACTTGTACAATGGCCAAGAGGCTGTGTCAACTGGATTCATCAAGCTTCTGAAGAAGGAGGATTATGTAGTGAGCACCTACAGAGATCATGTTCACGCATTGAGTAAGGGGGTCCCATCTCGGGCCGTGATGAGTGAACTGTTTGGGAAGGCAACAGGATGCTGCCGAGGTCAGGGCGGTTCAATGCATATGTTTTCAAAAGAGCACAACATGCTTGGCGGGTTTGCATTCATTGGTGAAGGAATTCCAGTGGCCACTGGGGCTGCATTTTCAAGCAAGTACAGAAGGGAGGTGTTGAACCAGGCAGATGCTGATCAGGTGACATTGGCATTTTTTGGAGATGGGACTTGTAACAATGGACAGTTCTTTGAATGCCTGAACATGGCAGCTCTGTGGAAATTGCCAATTGTGTTCGTGGTTGAGAATAATTTGTGGGCTATTGGGATGTCGCATCTCAGAGCAACTTCAGATCCGCAGATATGGAAGAAAGGGCCAGCCTTTGGAATGCCAGGGATTCATGTTGATGGGATGGATGTTTTGAAGGTCAGAGAGGTGGCGAAGGAGGCAATTGAAAGGGCTAGAAGGGGAGAGGGACCAACTCTAGTAGAATGTGAGACCTACAGATTTAGAGGACATTCATTGGCTGACCCTGATGAGCTTCGCGACCCTGCTGAGAAGGAACACTATGCTGGTAGGGACCCCATCACTGCACTGAAACAATACCTTATTGAGAACAATTTAGCCAGTGAGCAAGAATTGAAGGCCATAGAGAACAAAATCGACGAGGTTCTTGATGATGCAGTTGAGTTTGCAGACAAGAGCCCTCTTCCACCCCGCAGTCAGCTGCTGGAGAATGTCTTTGCTGACCCAAAAGGCTTTGGAATTGGACCAGATGGAAGGTATAGATGTTTTACGTACAGTGGGCCTAGCTTAATTTGTCATCCTCTACACTATCTACTGCACTTCTCATCCTTTCCTTTTGGGCGGATAGAAGCAAAACAAACAAAAATGCCTCCCGCTAGTTACAGTCTATTTCACACTTTCGTTACAACCTCTTCTCATTCTTCTTCTGTGCTTCCCTTGAAACTGTTCAAACCCCAATTGAAGCGATTCATTTTACATTTCGGGCTTCCAAGGCGTTCTCGCACACCTCTAGAACCTTTTTTTTCTTCTCCTTCTTCTTCTATCTCTCAGCTGAAGAAAACTAGGGACGTGGTTGAAGAAAGGATTTATGGAGAAGAATCCGTTTACCCTCATAAGGGTGATGCTTTTTCAGACCAAGAACATAACGAAAAGCTTGAAAAAGCGTGTGAAGTGTACGTGTGCAACCTCCCCAGAAACTGTGATGCAGCATACTTACTTGACATGTTCAGGCCATATGGGACCATTCTATCTGTCCAGGTTTGCCGGAATGATGAGACTAATGAAAGTAAGGGGTGTGGTTACGTGACACTGGGATCTATATACTCAGCAAGAAATGCAGTTTCTGCGTTGGATGGATCAGATGTTGGTGGGCGCGAAATGAGGGTTAGATTTTCAATTGAGATGGATTTTAAAAGGAGGGGATCTTCCACCAAGAGAATCTTATACTATGAATCTTCTCATAAGTTGTATGTTGGCAATCTTGCTAAGACTATTAGACCTGAACAGTTGAGAGATCTCTTTAGCAGATTTGGAAATATAGTTGGTGCAAGAGTATTGCTTGATTTTAAACAAGGGAAAAGCCGAGCCTATGCCTTTCTCTCCTTTCAATCAGAGGCAGAACGTGATGCAGCAATGTCTCTCAATGGAACAGAATTTTATGGTCGAACACTAATAGTTAAAGAGGGTGTTGAGAGGACAACCTTTAACTGA 2202 0.4519 MSFTATKFAPSPLPLNSTTPRSNDKPLSFSFDHSKPNPSSSFLGSTRKLLRFNALAKPHARARASSPVAAVLLQQTSNLLVTKEEGLELYEDMILGRFFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDYVVSTYRDHVHALSKGVPSRAVMSELFGKATGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLNQADADQVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGIHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKEHYAGRDPITALKQYLIENNLASEQELKAIENKIDEVLDDAVEFADKSPLPPRSQLLENVFADPKGFGIGPDGRYRCFTYSGPSLICHPLHYLLHFSSFPFGRIEAKQTKMPPASYSLFHTFVTTSSHSSSVLPLKLFKPQLKRFILHFGLPRRSRTPLEPFFSSPSSSISQLKKTRDVVEERIYGEESVYPHKGDAFSDQEHNEKLEKACEVYVCNLPRNCDAAYLLDMFRPYGTILSVQVCRNDETNESKGCGYVTLGSIYSARNAVSALDGSDVGGREMRVRFSIEMDFKRRGSSTKRILYYESSHKLYVGNLAKTIRPEQLRDLFSRFGNIVGARVLLDFKQGKSRAYAFLSFQSEAERDAAMSLNGTEFYGRTLIVKEGVERTTFN 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02043 733 Coils Coil 362 389 - -
Spst4g02043 733 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 553 631 IPR000504 GO:0003723
Spst4g02043 733 MobiDBLite consensus disorder prediction 1 42 - -
Spst4g02043 733 FunFam Pyruvate dehydrogenase E1 component subunit alpha 56 411 - -
Spst4g02043 733 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 653 721 IPR000504 GO:0003723
Spst4g02043 733 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 555 625 IPR000504 GO:0003723
Spst4g02043 733 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 651 728 IPR000504 GO:0003723
Spst4g02043 733 Gene3D - 638 724 IPR012677 -
Spst4g02043 733 SUPERFAMILY RNA-binding domain, RBD 648 728 IPR035979 GO:0003676
Spst4g02043 733 Gene3D - 55 414 - -
Spst4g02043 733 Pfam Dehydrogenase E1 component 93 393 IPR001017 GO:0016624
Spst4g02043 733 Gene3D - 508 637 IPR012677 -
Spst4g02043 733 SMART rrm1_1 554 627 IPR000504 GO:0003723
Spst4g02043 733 SMART rrm1_1 652 724 IPR000504 GO:0003723
Spst4g02043 733 FunFam 30S ribosomal protein 2, chloroplastic 639 726 - -
Spst4g02043 733 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 505 636 - -
Spst4g02043 733 CDD TPP_E1_PDC_ADC_BCADC 89 387 - -
Spst4g02043 733 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 78 406 IPR029061 -
Spst4g02043 733 NCBIfam pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 83 404 IPR017597 GO:0004739|GO:0006086|GO:0043231
Spst4g02043 733 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 74 414 - -
Spst4g02043 733 SUPERFAMILY RNA-binding domain, RBD 543 638 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02043 Spst-Chr4 61242626 61249980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02043 5 419 Acyl Lipid Metabolism Gene Families AT1G01090 78.066 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02043 K00161 - gmx:100793091 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02043 4 61242626 61249980 Spst4g02043 4 61242626 61249980 ECH