Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02041 ATGGAGCTCGACCTCCGTTCAATCCTTCACTCTCCCACCTCCTCGTCCTCCTCCGACGCCGACACCGAAGCCGACGCTCCTCACCGCACCATTGATGATATTCTCAACGACTGTGACACTTCCTCTTCCTCATCATCTCCACCTTCCTCTCCCTCTCACTCCCCTTCTTCACTCACCAATTCTCATCCCCAAAACCCCACTCTTCAACCAAAACCACTCCAACCCGCACTCGATTCACTTTCTCGGGTCAAACCCGCCGAATTATCTGACCGCACACGCGTTTCGCGCCCGTTCTCTTCTCTATTACAGGGCGTTCGGTCCAATGCGAAGCCCGGCGCCGCGCTCGCTGCGGCAGCAGCGGCGTCTCGATCCGTTCCCACGCCGCACGCGGCGGCGATTATTTCCAGAAGAAAATCCGCGGCCGCGATCAGCTCCGAGTCAAGTTCGATCGCTGCCGCAGGCGACGATTATTCCGATGTTTCTTCCAAAGGCGAATTGGGTGAGCCTAGCGAGAAATTCGATCCTGTGCCGTGGAAAATCGTGACTCAGTCTAGTGAAACTACTTCTGTTAACGGCGAACGTTTTGAGAGAGATGTAGAAATTGTCAACGATTTGAAGGCTGATAGTGCCGCTGACAATCAGGTGCTTAGTGATAGTGGTAATGATAATGGTGATGGTAATAATGACAGTAATGGTAATGATAACGATTCTTCTATAGTGAGTGAGGAGAAGAGGATTTTAGATGAGGTTGACGGTGATCATGGGAAAGATACGAGTTCTGCACCGTTTGATGATGATGATGATGTTGATGTTGGTGACTTGGATGGGAATGATGGTGCTGATGAGAGAATCACAGCTACGGATTCAGCTATGGAAACAGAAGAAACGTTGAACAATGGTAGCAGTTCTATGGAAGATGTTAAGAATGAGATGAATGGTGGCGGTGGTGATGAGGGTAGTTCATTGGGTGATATTTCTGAGCTAGTGGAAGAGAGGCTTGAGGAATTGGAAAGCAGAAGGGCTGCTAAGAGAGAAGAGAAGAAACGAGAGTCTTCAATGAAACCACTTGAATTGGCTGAAGAACTGGAGAAGAAGCGAGCTTCAACTGGTTCGTATTTGGAAGAGGGTGCCGCTGCCCAGCCAATGAGGCTGGAGGGCGTTCGGAGAGGGTCCACGACATTAGGATACTTTGATGTTGATGCTGATAATGCTGTCACGAGGGCTATTTCGTCCCAAACATTCAAGCGTGAGCAAGGTTCTGCCCGAGCCTTGGCAGTGCATGCTAATTATATTGCAGTAGGAATGTCAAAGGGGCTCATTGCTGTCTTTCCCAGTAAATATTCCATTCATCATGCTGACAACAATGATGGAAAGATGTTGATGCTTGCTGTACAAGGTGATCGGTTGCGTGCTGCAGTGACATCCATGTCTTTCAATCAACAAGGAGACCTTCTTTTAGCTGGTTATGGTGATGGTCATCTTACCCTGTGGGATGTACAGAAAGGTGTCGTGGCAAAAGTTATTAGTGGTGAGCATACAGCACCAGTAGTACATACCTTATTTCTAGGACAAGATCCTCAGAATACTCGACAATTTAAAGCAGTTACTGGTGATTGTAAGGGTCTGGTTCTCTTGCACATTATCTCAGTGGTTCCTTTGGTTCCTTTGTTTAGTAGATTCTCAATCAAAACTCAGTGTCTTCTTGATGGACAAAGTACAGGCTTGGTGCTTTCAGCTTCACCACTCCTTTTTGATGACTTCAGTGGAAGTGCTTCACCTTTTTCTCAGGGAAACACCTCAGCCCCAGCCAGCAGTATAAGCAGCATGATGGGTGTTGTTGGAGGAGATGCAGGGTGGAAACTCTTCAATGAAGCCCCTTCTATGGTGGAAGAAGGTGTGGTTGTATTTGTAACCCATCAAACTGCATTGGTGGTACGGCTGAGCCCTACATTGCAAGTCTATGCTCAACTCTCTAGGCCTGATGGGGTTCGGGAGGGTTCTATGCCATATACTGCATGGAAATACATGACACAAGCACATAGTTCTACTGAAAATATGTCTGCAGAAGCTATTGAAAGAGTTTCATTGCTTGCAATTGCCTGGGAACGGAAGGTTCTAGTTGCAAAGTTGGTTAAATCAGAATTAAAAGTATATGGAAGATGGTCTCTGGAAGGTGCAGCTATAGGTCTAGCATGGTTGGATGATCAGATGCTGGAAGTTCAAACTTCGAGTGGACATCTGTATTTATTTTCCAAGGATGGAACTGTGATTCACCAAACAAGTGTTGCCGTAGATGGTATTGGAGGAGATGATCTAGTCTCTTATCATACTCATTTCATCAATGTATTTGGAAATCCTGAGAAAGCTTATCATAACTCTATTGCTGTAAGAGGAGCTTCTATTTATATACTTGGTCCAACACATCTTCTTGTTTCTCGTCTTCTACCTTGGAAAGAGCGCATTTCTGTTTTGCGGAAAGCAGGTGACTGGATGGGTGCCTTGAACATGGCAATGACTCTTTATGATGGTCATGCGCATGGGGTTATTGACCTTCCTAGAACCATGGATGCCGTACATGAGGCCATAATGCCCTTCTTAGTGGAGTTGCTTACATCATATGTTGATGAAGTGTTCTCCTATATTTCAGTGGCATTCTGCAACCAAATAGGTAAACAGGACCAATCGAATGATTTAAATAGTAGAAGCAATTCAGTACATGGTGAGATAAAGGAGCAATACACTCGTGTTGGTGGGGTTGCTGTTGAATTTTGTTGTCATATCAAACGGATGGACATTCTTTTTGATGAAATTTTCTCTAAGTTTGTGGGTGTTCAACAGCGAGAAACATTTTTGGAGCTTCTGGAGCCATATATTTTGAAAGACATGCTTGGATCTCTACCTCCTGAGATTATGCAAGAACTGGTAGAGTATTATAGTACCAAAGGGTGGTTACAGCGGGTTGAGCAATGTGTACTTCACATGGATATATCATCCTTGGATTTTAATCAGGTTGTCAGATTATGCCGGGAGCATGGACTATATAGTGCCCTGGTGTATGTCTTCAATAAAGGATTAGATGATTTTAGGGCACCTCTGGAGGAGCTGTTTGCTGTCTTACAAAATAGCCAAAAGGAAATTGCTACTGCACTTGGGTATGCTTCCATGTCTATTATTCCAGCATATCCTTATTTTGCTTTCTCTATATCCATGTATGCCAAATCAATTGAGAAAGCCAATATGGATTTGTGA 3249 0.4497 MELDLRSILHSPTSSSSSDADTEADAPHRTIDDILNDCDTSSSSSSPPSSPSHSPSSLTNSHPQNPTLQPKPLQPALDSLSRVKPAELSDRTRVSRPFSSLLQGVRSNAKPGAALAAAAAASRSVPTPHAAAIISRRKSAAAISSESSSIAAAGDDYSDVSSKGELGEPSEKFDPVPWKIVTQSSETTSVNGERFERDVEIVNDLKADSAADNQVLSDSGNDNGDGNNDSNGNDNDSSIVSEEKRILDEVDGDHGKDTSSAPFDDDDDVDVGDLDGNDGADERITATDSAMETEETLNNGSSSMEDVKNEMNGGGGDEGSSLGDISELVEERLEELESRRAAKREEKKRESSMKPLELAEELEKKRASTGSYLEEGAAAQPMRLEGVRRGSTTLGYFDVDADNAVTRAISSQTFKREQGSARALAVHANYIAVGMSKGLIAVFPSKYSIHHADNNDGKMLMLAVQGDRLRAAVTSMSFNQQGDLLLAGYGDGHLTLWDVQKGVVAKVISGEHTAPVVHTLFLGQDPQNTRQFKAVTGDCKGLVLLHIISVVPLVPLFSRFSIKTQCLLDGQSTGLVLSASPLLFDDFSGSASPFSQGNTSAPASSISSMMGVVGGDAGWKLFNEAPSMVEEGVVVFVTHQTALVVRLSPTLQVYAQLSRPDGVREGSMPYTAWKYMTQAHSSTENMSAEAIERVSLLAIAWERKVLVAKLVKSELKVYGRWSLEGAAIGLAWLDDQMLEVQTSSGHLYLFSKDGTVIHQTSVAVDGIGGDDLVSYHTHFINVFGNPEKAYHNSIAVRGASIYILGPTHLLVSRLLPWKERISVLRKAGDWMGALNMAMTLYDGHAHGVIDLPRTMDAVHEAIMPFLVELLTSYVDEVFSYISVAFCNQIGKQDQSNDLNSRSNSVHGEIKEQYTRVGGVAVEFCCHIKRMDILFDEIFSKFVGVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYVFNKGLDDFRAPLEELFAVLQNSQKEIATALGYASMSIIPAYPYFAFSISMYAKSIEKANMDL 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02041 1082 PANTHER VACUOLAR PROTEIN SORTING VPS41 211 1045 IPR045111 GO:0006623
Spst4g02041 1082 MobiDBLite consensus disorder prediction 336 370 - -
Spst4g02041 1082 MobiDBLite consensus disorder prediction 36 74 - -
Spst4g02041 1082 MobiDBLite consensus disorder prediction 1 128 - -
Spst4g02041 1082 ProSiteProfiles Trp-Asp (WD) repeats profile. 473 507 IPR001680 GO:0005515
Spst4g02041 1082 MobiDBLite consensus disorder prediction 238 262 - -
Spst4g02041 1082 MobiDBLite consensus disorder prediction 336 377 - -
Spst4g02041 1082 MobiDBLite consensus disorder prediction 210 237 - -
Spst4g02041 1082 Coils Coil 326 353 - -
Spst4g02041 1082 MobiDBLite consensus disorder prediction 144 323 - -
Spst4g02041 1082 ProSitePatterns Trp-Asp (WD) repeats signature. 485 499 IPR019775 -
Spst4g02041 1082 Pfam Golgi CORVET complex core vacuolar protein 8 949 1053 IPR025941 -
Spst4g02041 1082 Gene3D - 388 547 IPR015943 GO:0005515
Spst4g02041 1082 SUPERFAMILY WD40 repeat-like 412 543 IPR036322 GO:0005515
Spst4g02041 1082 MobiDBLite consensus disorder prediction 290 308 - -
Spst4g02041 1082 MobiDBLite consensus disorder prediction 191 205 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02041 K20178 - gmx:100780869 1600.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02041 4 61205771 61211442 Spst4g02041 4 61205771 61211442 ECH