Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02040 ATGGCAACTTTGACTGCTTCAAATAAGTTGGTCTCTGGAAGTTCTCGTGTCCACCATGGACCAACTGCATCATATGAGTCGAAAGCAGTGGCAATGGGACTTAGATTTCTAAAGCAGACCAATACTCATAGTGGACTGAGAATTTTGAATCCAGTGGATGAGCTACTTAACAGGACCCCAATTAAAACCAATGCAGTGCAAGCTATGAGGAAGGGACTTCAAGGGAAGAATGCCAAGCCTACAGATATAATCGAATGTGGCATGAATTTGATTTTTGTTGGAACGGAGGTGGGTCCATGGAGCAAAACTGGTGGTTTAGGAGATGTTCTTGGGGGCCTTCCACCAGCATTAGCTGGTAATGGACATCGAGTTATGACTATCGCGCCGCGTTATGACCAATACAAAGATGCCTGGGATACAAGTGTTGTGGTTGAGCTGAAAGTAGGGGATAGAACTGAAAAGGTTCGCTACTTCCATAGCTATAAGAGGGGAGTTGATCGTGTCTTTGTGGATCACCCTTGGTTTCTTGCAAAGGTCTGGGGGAAAACCGGAACCAAACTTTACGGACCAACTACAGGACATGATTACGAAGACAACCAACTACGGTTTAGCCTATTTTGCCAGGCAGCTTTGGAAGCACCAAGGGTTCTGAGTCTCAATTCCAGTAAATATTTCTCTGGACCATATGGTGAAGATGTAATTTTCATCGCCAACGATTGGCACACCGCCCTTCTCCCCTGCTACTTGAAAACCATGTATCAGTCAGTGGGCATCTATAAGAATGCTCGAGTTGTTTTTTGTATCCACAACATTGCTTACCAAGGAAGATTTTCATTCACAGACTATGCACTTCTAAATCTCCCTGACCAATTTAAAAGCTCCTTTGACTTTATTGATGGGCATGTTAAACCAGTGTTTGGAAGGAAAATCAATTGGATGAAAGCTGGAATTCTAGAATCATGGTTTGTTATAACTGTTAGTCCAAACTATGCTGAAGAACTGGTGTCAGGTCCAGACAAAGGAGTGGAACTAGACAACATCCTTCGCAAAATTGAAGATCGTTTTGTTGGAATTGTGAATGGCATGGATGTTCAGGAGTGGAATCCATCCACTGACAAATATATAGCTGTAAAATACGATGTTTCAACAGTTTTGGAGGCAAAAGCTCTTCTGAAAGAAGCCCTCCAAGCAGAAGTTGGATTGCCGGTGGACAGAAATATTCCTCTCATTGGTTTCATTGGTAGGCTTGAAGAGCAAAAAGGTTCCGATATTCTTGCAGAAGCCATTCCCCAATTTATCGAAGAGAATGTTCAGTTGGTAGCCCTAGGAACAGGAAAAAAACAAATGGAAAAACAGCTTCAGGAACTTGAAATATCATACCCTGACAAGGCTAGAGGAGTGGCAAAATTCAATGTTCCCCTAGCCCACATGATAATTGCTGGAGCTGATTTCATATTGGTTCCTAGCAGATTTGAGCCTTGTGGTCTCATTCAGTTACAAGCTATGCGCTATGGATCAGTACCTATTGTTGCCTCAACCGGTGGATTAGTTGACACTGTCAAAGAAGGCTTCACTGGATTTCAGATGGGTTCCTTCAATGTTGAATGTGAAGCTGTGGATGCTGCCGATGTGAATGCTATAGCAAAGACTGTCAAAAGGGCCCTTACAATGTATGGAACACCAGCTTTTACAGAAATGATCAAGAATTGCATGGCTCAAGATCTTTCATGGAAGGGACCTGCTAAGAAGTGGGAGGAAGTGCTGTTAAGCTTGGGAGTTCCTGGCAGTGAACCTGGAATTGATGGAGAAGAAATTGCTCCACAGGCAAAGGAAAATGTGGCAACTCCATAA 1851 0.4317 MATLTASNKLVSGSSRVHHGPTASYESKAVAMGLRFLKQTNTHSGLRILNPVDELLNRTPIKTNAVQAMRKGLQGKNAKPTDIIECGMNLIFVGTEVGPWSKTGGLGDVLGGLPPALAGNGHRVMTIAPRYDQYKDAWDTSVVVELKVGDRTEKVRYFHSYKRGVDRVFVDHPWFLAKVWGKTGTKLYGPTTGHDYEDNQLRFSLFCQAALEAPRVLSLNSSKYFSGPYGEDVIFIANDWHTALLPCYLKTMYQSVGIYKNARVVFCIHNIAYQGRFSFTDYALLNLPDQFKSSFDFIDGHVKPVFGRKINWMKAGILESWFVITVSPNYAEELVSGPDKGVELDNILRKIEDRFVGIVNGMDVQEWNPSTDKYIAVKYDVSTVLEAKALLKEALQAEVGLPVDRNIPLIGFIGRLEEQKGSDILAEAIPQFIEENVQLVALGTGKKQMEKQLQELEISYPDKARGVAKFNVPLAHMIIAGADFILVPSRFEPCGLIQLQAMRYGSVPIVASTGGLVDTVKEGFTGFQMGSFNVECEAVDAADVNAIAKTVKRALTMYGTPAFTEMIKNCMAQDLSWKGPAKKWEEVLLSLGVPGSEPGIDGEEIAPQAKENVATP 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02040 616 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 80 594 - -
Spst4g02040 616 Hamap Glycogen synthase [glgA]. 88 591 IPR011835 GO:0004373
Spst4g02040 616 MobiDBLite consensus disorder prediction 1 22 - -
Spst4g02040 616 Pfam Starch synthase catalytic domain 90 350 IPR013534 -
Spst4g02040 616 Gene3D Glycogen Phosphorylase B; 90 582 - -
Spst4g02040 616 MobiDBLite consensus disorder prediction 595 616 - -
Spst4g02040 616 FunFam Starch synthase, chloroplastic/amyloplastic 89 367 - -
Spst4g02040 616 NCBIfam glycogen/starch synthase, ADP-glucose type 88 589 IPR011835 GO:0004373
Spst4g02040 616 FunFam Starch synthase, chloroplastic/amyloplastic 368 573 - -
Spst4g02040 616 MobiDBLite consensus disorder prediction 1 21 - -
Spst4g02040 616 Gene3D Glycogen Phosphorylase B; 363 573 - -
Spst4g02040 616 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 67 588 - -
Spst4g02040 616 Pfam Glycosyl transferases group 1 407 529 IPR001296 GO:0016757
Spst4g02040 616 CDD GT5_Glycogen_synthase_DULL1-like 89 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02040 Spst-Chr4 61196752 61200292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02040 1 616 Glycosyltransferase AT1G32900 69.692 0.0 854
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02040 K13679 - gmx:100037476 1103.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02040 4 61196752 61200292 Spst4g02040 4 61196752 61200292 ECH