Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02002 ATGAATCGTTACAATAACATATCCCTCGTAATCCTCAGTGTGGTCGTAGGTTGTGTAATTCGCTGGTTGCTGTTCAAAACGGGATTGATATACAGCATAAGAAAACTCTTGAGATGGCTCCAGGATTGGTTCCACGTTTACCAGTTCCTCAAAGTCCCCGAATTCAACGAAAGCATGGAGCGGAATCATCTTCACCGCAAAGTTTCTCTCTATTTGCATTCCCTTCCTTCAATAGAAGATGCCGACTTCACCAATCTCGTTTCCGGTTACGACCAGAACGACATCGTTTTGCGCCTCGACCCTAACCAAATCGTTCAGGACCATTTCCTCGGGGCCACACTCTTCTGGTTCGAACAAAAAACCCGACCGGACCGGATTTCCTCCTTCGTTCTCAAAATTAGAAGAACCGATAAACGCCGAATCCTCCGCCACTACCTCCGCCATATCAATACTTTCGCCGATGAGATGGAGAACCCAAGGAAGCGCCATTTGCGGTTGTTCATGAACGCCGCTGCCGCCGATGGCGGCGGCGGCGTAACACGGTGGAAATCTGTTCCGTTCACTCATCCGGCGACTTTTGAAACTATGGCGATGGAAAAGGATCTTAAGAACAAAATCAAATCCGATATCGAATCGTTTCTCAAAGCGAAGCAATACTACCGTAAACTCGGCCGCGCGTGGAAGCGGAGTTTCCTACTGTATGGTGCCTCCGGCACCGGAAAATCGACCTTTATCGCTGCAATGGCGAATTTCCTCCGCTATGATGTGTACGACGTGGACCTGTCGAAGATTCGCTGTGATTCGGATCTTCAGTTTCTCCTAATGGAAACTACGGCGAAGTCGATCGTCGTGGTGGAGGATCTCGACCGGTTTCTCTCACCGGAAATGGAATCTGCGGTTACCGCGTGGGGGATACAGAGCTTCATGGACGGGATTCTGAGCGCCTGCTGCGGCGAGGAGAGGGTAATGGTTTTCACGATGACCAGCAAGGAGTGCGTGGACCCGAATTTGTTACGGCCGGGTCGGGTCGACGTGCACATCCACTTTCCGGTTTGTGATTTCTCGGCATTCAAGACGCTTGCGAGCAGCTACCTCGGCGTGAGGGAGCACAAGCTGTTTGCGCAGGTGGAGGAGATTTTCCGGCACGGCGTGAGTCTCAGCCCCGCCGAGATCAGCGAGTTGATGATCGCGAACCGGAACTCGCCGAGTCGGGCCATAAAATCGGTTATCGGGGCGCTCCAATCGGACTGTGATGGGAGAAAGTACGCGGAGATGATCGGACGGCAGATAGGGATGGATGACGTGGACGAAGCGTCCTTTGGTGGGGACGAGTTATCTACGGTTAAGGATTCGAGGAAGTTGTACGGTTTCTTCAAAAAACGGAATTCCAGAAGAACCCTGAAAGTCCATGATACATCATGA 1422 0.5155 MNRYNNISLVILSVVVGCVIRWLLFKTGLIYSIRKLLRWLQDWFHVYQFLKVPEFNESMERNHLHRKVSLYLHSLPSIEDADFTNLVSGYDQNDIVLRLDPNQIVQDHFLGATLFWFEQKTRPDRISSFVLKIRRTDKRRILRHYLRHINTFADEMENPRKRHLRLFMNAAAADGGGGVTRWKSVPFTHPATFETMAMEKDLKNKIKSDIESFLKAKQYYRKLGRAWKRSFLLYGASGTGKSTFIAAMANFLRYDVYDVDLSKIRCDSDLQFLLMETTAKSIVVVEDLDRFLSPEMESAVTAWGIQSFMDGILSACCGEERVMVFTMTSKECVDPNLLRPGRVDVHIHFPVCDFSAFKTLASSYLGVREHKLFAQVEEIFRHGVSLSPAEISELMIANRNSPSRAIKSVIGALQSDCDGRKYAEMIGRQIGMDDVDEASFGGDELSTVKDSRKLYGFFKKRNSRRTLKVHDTS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02002 473 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Spst4g02002 473 Gene3D - 182 351 IPR027417 -
Spst4g02002 473 Coils Coil 472 473 - -
Spst4g02002 473 Pfam Domain associated at C-terminal with AAA 33 116 IPR025753 -
Spst4g02002 473 PANTHER BCS1 AAA-TYPE ATPASE 43 414 - -
Spst4g02002 473 Pfam ATPase family associated with various cellular activities (AAA) 232 350 IPR003959 GO:0005524|GO:0016887
Spst4g02002 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 410 IPR027417 -
Spst4g02002 473 SMART AAA_5 227 353 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02002 Spst-Chr4 60692203 60693624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02002 185 395 Miscellaneous Gene Families AT5G53170 25.221 1.11e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02002 - K08900 gmx:100787809 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02002 4 60692203 60693624 Spst4g02002 4 60692203 60693624 ECH