Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01996 ATGGAAAGCAACCACAGCATGAAGCAAAGCACCATGGAGACAGAGTTTGAGGACTTTCTTCCAGTGATGGCAGAGAAGCTTGATGTGGAGTCCTTTGTGTCAGAACTGTGTGGGGGTTTCAACCTTCTATCAGACCCAGAAACAGGTTTGATAACAAGTGAGAGTCTGAGGACAAACTCAGCTCTTCTTGGGATGGAAGGCATGAGCATGGAGGATGCAGAGGCTATGGTTAGACAAGGTGATCTTGATGGGGATGGAAAGCTTAATGAAACTGAATTTTGCATCCTCATGGTGAGGCTTAGCCCTGGAATGATGGAAGATGCTGAGGCATGGCTGGAAAAGGCAATTGATGAAGAGCTTAGCAAGTCTTCAACTTAG 378 0.463 MESNHSMKQSTMETEFEDFLPVMAEKLDVESFVSELCGGFNLLSDPETGLITSESLRTNSALLGMEGMSMEDAEAMVRQGDLDGDGKLNETEFCILMVRLSPGMMEDAEAWLEKAIDEELSKSST 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01996 125 ProSitePatterns EF-hand calcium-binding domain. 81 93 IPR018247 -
Spst4g01996 125 PANTHER CALCIUM-BINDING PROTEIN KIC 13 122 IPR044205 GO:0005509
Spst4g01996 125 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Spst4g01996 125 Pfam EF-hand domain pair 47 99 IPR002048 GO:0005509
Spst4g01996 125 SUPERFAMILY EF-hand 15 101 IPR011992 -
Spst4g01996 125 Gene3D - 13 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01996 Spst-Chr4 60653736 60654113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01996 10 120 EF-hand Containing Proteins AT2G46600 73.874 8.09e-58 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01996 K24345 - gmx:100801586 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01996 4 60653736 60654113 Spst4g01996 4 60653736 60654113 ECH