Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01989 ATGGCCAACTTAATCACCTTGTTTATGCTGTGGTTGTCTATGATATCTGCTATCTACAATGTGAAGCTTATAGCACATGGAAGTATTGAAGGAGGATCAACCAGGTTCTATGATTTCAAGGTTCAAACCAAACGAGATACCAAACTTTGCAACTCCAAAGACATTATCACAGTTAATGGTATGTTTCCAGGACCTGTTGTTTACGCCCAAGAGGATGATAGAATCATAGTAAAAGTAACCAACAAGACACCTTTCAATGTTACAATTCATTGGCATGGTATTCGGCAAAAGCTATCATGCTGGTATGATGGACCATCCTTGATTACACAATGTCCAATTCAATCAGGCCAGAGTTTCACCTATAATTTTTCAGTGGTGCAGCAGAAGGGCACCTTCTTCTGGCATGCTCATGTTTCTTGGTTGAGAGGAACAGTTCATGGTGCCATGATTGTGTATCCAAAGGCCGGGGTACCTTACCCGTTTAAGTTTCCCTATCAAGAGCACGTAATTATACTAGGGGAATATTGGTTGCAGGATCTCCAAGAAATTGAGAATGCCACTCTAGCAAGTGGAGGACCTCCTCCTAAAGCAGATGCATATACCATTAACGGTCATCCAGGGCCCAACTACAACTGCTCCGCAAATGATGTCTACCAAATTGATGTGATTCCGGGGAAGACCTATTTGTTGAGATTGATTAATGCGGGTTTGAACACTGAGAATTTCTTTGTCATTGCTAATCACAATTTAACAATCGTGGAAGCTGATGCTGAATACACCAAGCCATTCACCACAGACACCGTGATGATTGGACCAGGTCAAACACTGGGTGTCCTTGTCTCTGCAAATCAACCAGTAGGAAAATACTCCATGGCTGTAGCACCTTACGAGTCTGGAAAGGTTGTCATATATCAAAACGTTTCAGCTATAGCTGGCTTTAACTACATAGGAGCTCCATCTGATAGCCTCTCTTTACCAGCTAAATTGCCTAAACTTGATGATGAAATGGCTGTTAAGACAGTCATGGACGGATTAAGGAGCCTAAATCAAGTCAATGTTTTCAAAGAAATTGATAAATATCTATTCATTACCATTGGATTGAATGTTCAAAAGTGTCACTCGAAGACACCAAAGCAAAACTGCCAAGTCATGCACAATGGGGTACTGGCAGCTTCAATGAACAATATAACTTTCGTTAATCCCAATATTTCAATCTTGGAAGCATATTATAAGAAGATAAAAGGAACATATACTGAAGATTTCCCAGACACACCCCCAAAGTTCTATGACTTTGTTAATGGCGCCCCTAATAACATTCCATATGACACGCAGTCATTGAATGGTACTAGAATAAAGGTACTTAAATATGGTAGCAGGGTGCAACTCATTCTGCAGGACACGGGGATAGTCAACACAGAAAACCACCCAATGCACTTCCACGGCCACAGCTTTTATGTGGTAGGGTATGGCACGGGCAACTATAACCCATTAACTGCACAATTTAATTTGGTGGATCCTCCATACATGAACACAATTGGAGTTCCAACAGGAGGATGGGCAGCAATTCGCTTTGTTGCTGACAATCCAGGGGTGTGGTTTCTGCACTGCCACATTGATATACACAAGTCATGGGGACTGGGAATGGTATTTATAGTGAACAATGGAAAAGGAGAGCTAGAATCCTTACCACATCCTCCACCAGACTTGCCACAGTGTTAA 1719 0.4171 MANLITLFMLWLSMISAIYNVKLIAHGSIEGGSTRFYDFKVQTKRDTKLCNSKDIITVNGMFPGPVVYAQEDDRIIVKVTNKTPFNVTIHWHGIRQKLSCWYDGPSLITQCPIQSGQSFTYNFSVVQQKGTFFWHAHVSWLRGTVHGAMIVYPKAGVPYPFKFPYQEHVIILGEYWLQDLQEIENATLASGGPPPKADAYTINGHPGPNYNCSANDVYQIDVIPGKTYLLRLINAGLNTENFFVIANHNLTIVEADAEYTKPFTTDTVMIGPGQTLGVLVSANQPVGKYSMAVAPYESGKVVIYQNVSAIAGFNYIGAPSDSLSLPAKLPKLDDEMAVKTVMDGLRSLNQVNVFKEIDKYLFITIGLNVQKCHSKTPKQNCQVMHNGVLAASMNNITFVNPNISILEAYYKKIKGTYTEDFPDTPPKFYDFVNGAPNNIPYDTQSLNGTRIKVLKYGSRVQLILQDTGIVNTENHPMHFHGHSFYVVGYGTGNYNPLTAQFNLVDPPYMNTIGVPTGGWAAIRFVADNPGVWFLHCHIDIHKSWGLGMVFIVNNGKGELESLPHPPPDLPQC 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01989 572 ProSitePatterns Multicopper oxidases signature 1. 530 550 IPR033138 -
Spst4g01989 572 SUPERFAMILY Cupredoxins 33 175 IPR008972 -
Spst4g01989 572 Pfam Multicopper oxidase 422 555 IPR011706 GO:0005507|GO:0016491
Spst4g01989 572 SUPERFAMILY Cupredoxins 357 572 IPR008972 -
Spst4g01989 572 Gene3D - 16 153 IPR008972 -
Spst4g01989 572 Gene3D - 163 350 IPR008972 -
Spst4g01989 572 PANTHER MULTI-COPPER OXIDASE 39 557 IPR045087 -
Spst4g01989 572 ProSitePatterns Multicopper oxidases signature 2. 535 546 IPR002355 GO:0005507
Spst4g01989 572 Pfam Multicopper oxidase 167 317 IPR001117 -
Spst4g01989 572 CDD CuRO_2_LCC_plant 168 315 IPR034285 -
Spst4g01989 572 Pfam Multicopper oxidase 41 155 IPR011707 GO:0005507
Spst4g01989 572 Gene3D - 370 572 IPR008972 -
Spst4g01989 572 CDD CuRO_3_LCC_plant 417 555 IPR034289 GO:0005507
Spst4g01989 572 CDD CuRO_1_LCC_plant 37 153 IPR034288 GO:0005507
Spst4g01989 572 NCBIfam laccase 33 572 IPR017761 GO:0046274|GO:0048046|GO:0052716
Spst4g01989 572 SUPERFAMILY Cupredoxins 164 345 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01989 Spst-Chr4 60574164 60576632 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01989 K05909 - gmx:100803876 1089.72