Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01986 ATGCCACCTCAAATGCAGCCCTTTGCTGATTACCTTCGCGCCCCGCCGCACCCAGACGGCGGCGATCGGCGGACCCCAATCCCGCCGCTGAACCGAACCGTGAAGAAGACGCTGGTAGTAGAAGAGTCCTCCTTGGACAACCCGGATCTAGGCCCGATCCTTCTGAAGATGGCCCGAGAAACAATAGCGTCCGGTGAGAGCCCGGTGAAGGCCCTGGACTTCGCCATTCGGGCCTCAAAGTCGTTCGAGCGGTGTGCGGGCCCGGGGCTGGAGCTTGCTACGTGTCTCCATGTGGTTGCTGCGATCTACAGTAGTTTGGGGCGGTTGGATGAGGCGGTTGAGGCTTTGGAGCGGTCCATTTTCTTGTTGGAAGGGGAAAACGGGTCGGATCATGCAATGGCCCAGTTTTCCGGGTACATGCAACTTGGTGACACGTATTCCATGATTGGACAGTTGGACAGGGCTATTTCTTGTTACAAGTCGGGTTTGCAGATCCAAATGGATGTTCTTGGTGAGTCCGACCCGAGAATCGCTGAGACTTGTAGGTACTTAGCTGAAGCCCATGTCCAAGCCATGCAATTTGAGCAGGCAGAGAAGTTCTGCAAGAAGACCCTCGAAATCCACAGGGAGCATTGCTCTCCTGCTTCCCTTACCGAAGCAGCCGACAGGCGTCTAATGGCCCTTATATGTGAGGCCAAGGGAGATTATGAACCAGCTCTTGAGCACCTTGTCCTAGCTAGCATGTCCATGATCGCCAATGCACAAGATAATGAGGTTGCAGCTATTGATGTTAGCATTGGTGATATTTACATGTCACTCTGTCGTTTTGATGAGGCTGTTTTTGCCTACCAGAAAGCACTGACAGTGTTCAAATCCACCAAAGGCGAAAGCCACAGTTCTGTGGCGTTAGTGTACATTCGCCTTGCAGACCTTTACTACAGGACAGGAAAATTAAGAGAATCAAAATCGTATTGCGAAAATGCCTTAAGAATATACAGTAAGCCTGTGGTTGGAACAACGGCAGGGGAGATTGCAAGTGGGTTGACTGAAATCTCTGCCATCTATGAAGCTCTAAATGAGCCTGAGGAGGCACTGAAGCTGCTGCAGAACGCAGTGAAATTGTTGGAGGATATCCCTGGACAACATAGGACAGTGGCAGGAATAGAAGCCCAAATGGGAGTGATGTTCTACATGGTTGGGAGGTACACGGAGGCATGGAAGTCTTTTGAGAATGCTATCACCAAGCTGAGAGCAAGTGGGGAGAAGAAATCCACCTTTTTTGGAGTCGTATTGAACCAGATGGGGCTGGCATGTGTGCAACTGTATAAAATAGGGGACGCTGCCAAACTTTTTGAGGAAGCAAGAGATATATTAGAAAGAGAGTATGGTACATATCATTCTGACACTCTTGGAGTGTATAGCAATCTTGCAGCAACTTATGATGCCATGGGGAGAGTTGATGATGCCATTGAGATATTGGAATACATACTAAAAATGAGAGAAGAAAAACTTGGAACTGCTAATCCAGATGTTGATGATGAAAAGAAGCGACTATTTGAGCTTCTGAAAGAGACAGGAAGAGTTCAAAATAAAAGGGGGAAAAAATCTCTTGAAAACCTTATAGATTCCAATTCCTTAAAGATGAAGAAGGAACGGAAGAAAAGATGGGCTGCTTTTGGTTTGAGAACTTAA 1692 0.4805 MPPQMQPFADYLRAPPHPDGGDRRTPIPPLNRTVKKTLVVEESSLDNPDLGPILLKMARETIASGESPVKALDFAIRASKSFERCAGPGLELATCLHVVAAIYSSLGRLDEAVEALERSIFLLEGENGSDHAMAQFSGYMQLGDTYSMIGQLDRAISCYKSGLQIQMDVLGESDPRIAETCRYLAEAHVQAMQFEQAEKFCKKTLEIHREHCSPASLTEAADRRLMALICEAKGDYEPALEHLVLASMSMIANAQDNEVAAIDVSIGDIYMSLCRFDEAVFAYQKALTVFKSTKGESHSSVALVYIRLADLYYRTGKLRESKSYCENALRIYSKPVVGTTAGEIASGLTEISAIYEALNEPEEALKLLQNAVKLLEDIPGQHRTVAGIEAQMGVMFYMVGRYTEAWKSFENAITKLRASGEKKSTFFGVVLNQMGLACVQLYKIGDAAKLFEEARDILEREYGTYHSDTLGVYSNLAATYDAMGRVDDAIEILEYILKMREEKLGTANPDVDDEKKRLFELLKETGRVQNKRGKKSLENLIDSNSLKMKKERKKRWAAFGLRT 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01986 563 SUPERFAMILY TPR-like 139 499 IPR011990 GO:0005515
Spst4g01986 563 Pfam Tetratricopeptide repeat 259 333 - -
Spst4g01986 563 Pfam Tetratricopeptide repeat 430 502 - -
Spst4g01986 563 Gene3D Tetratricopeptide repeat domain 89 245 IPR011990 GO:0005515
Spst4g01986 563 MobiDBLite consensus disorder prediction 1 29 - -
Spst4g01986 563 Gene3D Tetratricopeptide repeat domain 427 546 IPR011990 GO:0005515
Spst4g01986 563 Gene3D Tetratricopeptide repeat domain 246 426 IPR011990 GO:0005515
Spst4g01986 563 ProSiteProfiles TPR repeat profile. 136 169 IPR019734 GO:0005515
Spst4g01986 563 SMART tpr_5 260 293 IPR019734 GO:0005515
Spst4g01986 563 SMART tpr_5 386 419 IPR019734 GO:0005515
Spst4g01986 563 SMART tpr_5 345 378 IPR019734 GO:0005515
Spst4g01986 563 SMART tpr_5 428 461 IPR019734 GO:0005515
Spst4g01986 563 SMART tpr_5 470 503 IPR019734 GO:0005515
Spst4g01986 563 SMART tpr_5 302 335 IPR019734 GO:0005515
Spst4g01986 563 SMART tpr_5 136 169 IPR019734 GO:0005515
Spst4g01986 563 SMART tpr_5 178 211 IPR019734 GO:0005515
Spst4g01986 563 SMART tpr_5 93 126 IPR019734 GO:0005515
Spst4g01986 563 SUPERFAMILY TPR-like 382 528 IPR011990 GO:0005515
Spst4g01986 563 SUPERFAMILY TPR-like 70 165 IPR011990 GO:0005515
Spst4g01986 563 Pfam MalT-like TPR region 97 244 IPR041617 -
Spst4g01986 563 ProSiteProfiles TPR repeat profile. 260 293 IPR019734 GO:0005515
Spst4g01986 563 ProSiteProfiles TPR repeat profile. 470 503 IPR019734 GO:0005515
Spst4g01986 563 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 37 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01986 Spst-Chr4 60535438 60539110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01986 99 305 Glycosyltransferase AT3G04240 24.771 1.98e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01986 - - gmx:100794697 992.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01986 4 60535438 60539110 Spst4g01986 4 60535438 60539110 ECH