Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01985 ATGAAAGAATCAGAAACGGAATCAGATGCATCAATTCGAAACACGAAGATGAACCCCATCGATCACCTTCCCCTCCGTCTCCTCAGATCCGACACGGTTCCACCCGCCCCTACCTTCTCCGAATCCACCGTCGATTTCCTCCCTCACTTCTGCGGCTACTCTTGGATCGCCTACGCCGCTTCTTCCCTCCTCGTCATCTCTCACTTCCCTTCTCCTCTTTCCCCTTACCAATCCCGCATCGGCCCCATTTTCCGACAATCCTTTCAGCTCTCCGGCGATCCCCTCGCCGCCGTCGCCTGGTCTCCTCACTCCCCATCCTCGGGTGACCTCGCTGCCGCTGCCGATTACTGCATCTGCCTATTCCACCACAACCCCACCGCAGCTAAAGGTTCTTTTTGTTGGAGCCAGAATGCAGTGCTTGTACAACAAACGAAAGTGGCAAACATCAAATGGACAGGATCAGGAGATGGAATCATTTCTGCTGGAATAGAGGTGGTTTTCTGGAAAAAGAACAACAAATGTTGGGAAGTTGCTTGGAAGTTTAAAGCAGATCAACCCCAAACTCTTGTTTGTGCAACATGGTCCATTGAGGGCCCTTCAGCAACTGCAGCACATCCTAGTAAAGACCAGATTAAAGGGGCCTTGACCAATGAGGAAAGCAAATGTGTAGTAGTATGTCAAAGCAATGGACCATCTGAATATTCAAAAGTCAAGCTGCATCATCCCCTACCTGTTGTAACGATTCAATGGAGACCATCAAGAGGAAAGCTATCAAACAGATACGGTAAATGTTCAGTAAGGCATGTATTGTTGACATGCAGCTTAGATGGGACTGCAAGGTTATGGAGTGAAATTGATAATGGAATGGCCAGGAGAGTTGGGAAGGACATCAATGATCAGAAGAATGCAGGATGGTCTTTTTGTGTTGTTGCTGTTATTGAGATTAATCATTCCTTAAATGGAACTCTTGGTTCAGATATATTTTTGAGATGGGGGACAGAATTTGAGGGAATATTTAGAACTGGTGAAGAGGCCAAACAAGTTTTTTCCAAAGAAGGATTTGAGTATGATGTTAGAAATTGTGATTGGATAGTTGGGTTTGGTCCTGGAATGTTGCTTAGCTTTTGGGCTATCCACTGTCTTGATGATATTTCCCCATTGAGATTCCCCCGAGTTACGTTATGGAAGAGACATGAACTCCAGAACCATGACATAGCAAATGTTTACAAATTTAACTCATCTGATTTTAAAAATGCATTATTACTTCCAAAGTTAATTTTATTGAGAAACTGCCTTTCTGGTCCACCTATTATATGCTCTCCACTTCAGCTATTGCCTTGCAATTCCTTAATTTGGTCAAATTTTCGTATTCTAACAATACAAGATGCAGTGGAGAACTCCATTGATAATGGTAACGCAGATAACATGTCCTCCTATTTGACTGGTGGGGTTTTGAACTTAGATGGTCATAGTGGGAAAATCTTAAAGGTTTCAATTCATCCTTATACATGCAAGGTTCAATTAGCTGCTTCTCTGGATTCTAATGGACTGCTTCTTTTTTGGTCACTTTCTAACATTTCAAACTGTATTTTGGGATGTCCAACATTGGTTCCTACCATGGAACTCTGTGGAAAGCTTGCGACTCAAGACTCTTGCTCCTTGTACACAAGCTTGACATGGGCTCCGTCAATAATTGGTGACAAACTGTTCTTTTTTATGGGACATTCCCGGGGGATTGATTGCTTCATAGTCAATATTTGTCGAACTGAAGAAGAAAACATTGAATGTCACTACTTATGCACTATTCCTTTCACTAGTCATGGTCCTTATGAAGATGGCCCTTTTGATATCTTTACAATTCCTTTGAACTCCACCTGTGACAAAGCTTTTTGTAATAATAAACTTATGCTGTTGGCAGTATGGATGGGGAGATTTCAGGCCCTATCGTGGGAAGTTAACTTGCACTCATTTGACATGTCAACAAACTGTTGTTGTAAATGCAGTTTTGATGCTAAAAGCATTGATGACTGTAGTGTTTGGGCATTTGAAAGTACATTTGCTGATAAAAAATATTGCATTACTGTAAATCCATGTTCATGTGAGTTTCCAAATTCAAATGATCTGGTTACTAGTTTTGCTGTGGCTAATCCAGGCACTCCAAGCCATATACGACAAGAGTTTGGCTTTGCAAATGATCTTTGTAGTAGTTATCCTACATACGTCATGATCACAGGCTCCTCTGAGGGCATCTTGAAACTCTGGAAAAGTAATCTGGGGAACTCATTGACCCAACACTTGCCATGGGAGCTTGTGGGTTTGTTTGTTGCACATGATGGTCCAATCAAGGGTATATGTTTCACTGGTTGTGGTGAGAAGATTGCTACGGTTGGCCGTGAAAGCAATTCAAATGCTATCAATACCATACATATATGGGATGCAGTACCACTAATCAGTGCAGGGACTTTTATTTTGGAGGATAAAATAAAGACTGATAGTGATGTTATTGCTCTAAAGTGGTTAACTTTAGGAACAGGGGAGTTATTGCTTGGAGTTTGTTTGCGAAATGACTTGCAAGTATATGCCCCCAAGTGTTGTACTGGTGCAACTATGTCAAACTATGTAAATTTTCCGAAATTGAATATATGGGTTTGCATTGCATATGCTCACACTTCCATTCCAATTCATGATTTCTTATGGGGACCCAGAGCTGCAGCAGTGGTGATTCATGGAAATTACTTTAGTATATTTAGTCATTGGTTGTTCCTCATGGAAAAAAGGCAAGGGAGTAATTTTCATCCTTGTGATTTAAAGCCCAATGCCTACAATTACGAGGATGAAATATATGAAGACATACTTTCTGCAGTTTTTACTGATTATGACATTGGTGCTTTCAGAGAACAGACAGATGGAGACAGTCAAGTAGATGTTGATTCTATGAAATCCATCAAAATCAATATGAAGGACAATTCCAGTAGCTTGTTTCTGGCAAAGGAACAATTAGAATTTGAACTTCATACCAAGGTTGGTTTATGGAGCATCTTAGAGGTAGCTGAGATAATTAGTGGATCATTGCCTACTTATCACCCTGATATACTACTTACTAATATAAGTTCAGGAAACTGGAACCGTGCTTATGTAGCTGTGAGGCATCTTGTTGAATGCCTGACTTTTAATTATGATCCTAACAAGAGACACATCTCCAAAAGAATTGGTCTTCCAAATATTGTTTTGTCAAATTATCTAGAAGGCTGTATATCAAAAGGTTCCCAAGGTAAGGGATTCCAGTGGGGTGGGGATGCAGCATCAATCACATCAATTTCACAGGCTCAAAGTAGCTTGTTCCAGTTTCCGTATCATTCAGGTTCCAGTGCTGAAAATGAAAGCATTTTCTCAACAAAATCTGAGCTTAATGGCTTTATTCAATCTCTTGAGAAATTTCCCGATTTACCACTTTTGATCGACATAGAGAAGACACAGATTCTTGCAATTATTGATCTTCTTAGTGAAGTTAGTAGTGCACACTCATCTTCTGCATATCAGAGTCTTGATGAACCTGGGCGAAG 3563 0.4086 MKESETESDASIRNTKMNPIDHLPLRLLRSDTVPPAPTFSESTVDFLPHFCGYSWIAYAASSLLVISHFPSPLSPYQSRIGPIFRQSFQLSGDPLAAVAWSPHSPSSGDLAAAADYCICLFHHNPTAAKGSFCWSQNAVLVQQTKVANIKWTGSGDGIISAGIEVVFWKKNNKCWEVAWKFKADQPQTLVCATWSIEGPSATAAHPSKDQIKGALTNEESKCVVVCQSNGPSEYSKVKLHHPLPVVTIQWRPSRGKLSNRYGKCSVRHVLLTCSLDGTARLWSEIDNGMARRVGKDINDQKNAGWSFCVVAVIEINHSLNGTLGSDIFLRWGTEFEGIFRTGEEAKQVFSKEGFEYDVRNCDWIVGFGPGMLLSFWAIHCLDDISPLRFPRVTLWKRHELQNHDIANVYKFNSSDFKNALLLPKLILLRNCLSGPPIICSPLQLLPCNSLIWSNFRILTIQDAVENSIDNGNADNMSSYLTGGVLNLDGHSGKILKVSIHPYTCKVQLAASLDSNGLLLFWSLSNISNCILGCPTLVPTMELCGKLATQDSCSLYTSLTWAPSIIGDKLFFFMGHSRGIDCFIVNICRTEEENIECHYLCTIPFTSHGPYEDGPFDIFTIPLNSTCDKAFCNNKLMLLAVWMGRFQALSWEVNLHSFDMSTNCCCKCSFDAKSIDDCSVWAFESTFADKKYCITVNPCSCEFPNSNDLVTSFAVANPGTPSHIRQEFGFANDLCSSYPTYVMITGSSEGILKLWKSNLGNSLTQHLPWELVGLFVAHDGPIKGICFTGCGEKIATVGRESNSNAINTIHIWDAVPLISAGTFILEDKIKTDSDVIALKWLTLGTGELLLGVCLRNDLQVYAPKCCTGATMSNYVNFPKLNIWVCIAYAHTSIPIHDFLWGPRAAAVVIHGNYFSIFSHWLFLMEKRQGSNFHPCDLKPNAYNYEDEIYEDILSAVFTDYDIGAFREQTDGDSQVDVDSMKSIKINMKDNSSSLFLAKEQLEFELHTKVGLWSILEVAEIISGSLPTYHPDILLTNISSGNWNRAYVAVRHLVECLTFNYDPNKRHISKRIGLPNIVLSNYLEGCISKGSQGKGFQWGGDAASITSISQAQSSLFQFPYHSGSSAENESIFSTKSELNGFIQSLEKFPDLPLLIDIEKTQILAIIDLLSEVSSAHSSSAYQSLDEPGR 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01985 1187 Gene3D - 472 861 IPR015943 GO:0005515
Spst4g01985 1187 Pfam RAVE protein 1 C terminal 791 1176 IPR022033 -
Spst4g01985 1187 PANTHER RABCONNECTIN-RELATED 29 1187 - -
Spst4g01985 1187 SMART WD40_4 81 122 IPR001680 GO:0005515
Spst4g01985 1187 SMART WD40_4 480 522 IPR001680 GO:0005515
Spst4g01985 1187 SMART WD40_4 767 812 IPR001680 GO:0005515
Spst4g01985 1187 SMART WD40_4 232 283 IPR001680 GO:0005515
Spst4g01985 1187 SMART WD40_4 695 755 IPR001680 GO:0005515
Spst4g01985 1187 SUPERFAMILY WD40 repeat-like 91 818 IPR036322 GO:0005515
Spst4g01985 1187 Gene3D - 68 374 IPR015943 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01985 K24155 - vra:106780326 2127.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01985 4 60529254 60534116 Spst4g01985 4 60529254 60534116 ECH