Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01972 ATGGAGAATCTGATACAGTTGGTGAACAAAATCCAGAGAGCGTGCACCGCTCTCGGCGATCATGGTGAGGAAAGCGCCATGCCTACTCTCTGGGACGCCCTTCCTTCCATCGCCGTCGTCGGAGGACAGACAATCCTTGATGCTGCAGGAAATTATGAACAAATGCGGATTGACGTGACTATAGTTGTGAGCTCTGGAAAATCTTCAGTCTTAGAGAGTGTTGTAGGGAAGGACTTTTTACCTCGAGGATCTGGAATTGTTACTCGGCGTCCTCTTGTTTTGCAACTTCATAAGATAGACGAAGGGAGAGAATACGCTGAATTTATGCACCTTCCAAGGAAGAAATTTACTGATTTTGCTGCTGTTAGGCAGGAGATCGCTGACGAGACTGACAGAGAAACGGGACGCAACAAGGGTATTTCATCTGTGCCCATCCATCTGAGTATCTACTCCCCTCATGTTGTCAATCTGACGCTGGTTGATCTTCCGGGACTTACTAAAGTCGCTGTTGAGGGTCAACCAGATAGCATCGTGCAAGACATTGAAAATATGGTTCGGTCCTTTATCGAAAAGCCGAATTGCATCATTTTGGCAATATCTCCTGCAAATCAAGACCTTGCAACCTCAGATGCAATTAAGATTTCCCGTGAAGTAGATCCTAAAGGGGAAAGGACGTTCGGAGTTTTGACAAAGATTGATCTTATGGACAAGGGTACTGATGCAACTGAGGTAAGTGAGCACTCTCTTGACACCCTCAATAAAGAATTTGGCTTGATCCTTGAAGGGAAAGCATATAAGCTAAATTTCCCTTGGATTGGTGTTGTTAACCGCTCCCAAGCTGATATCAATAAACAAGTCGATATGATTGCTGCACGGAAAAGAGAAAACGAGTATTTTGCTAATACCCCAGAATATAGACATCTTGCTTCCAGAATGGGCTCTGTGCATCTAGGAAAGGTGCTATCCAAGCATTTGGAAACTGTCATCAAGTCTCGGATCCCAGGCCTACAATCACTCATCAACAAGACCATCATTGAATTGGAGACAGAATTGAACCGTATTGGGAAACCTATTGCTGCTGATACTGGAGGGAAGTTGTACACGATAATGGAAATCTGTCGAACTTTTGATCAGATATTTAAAGATCATCTTGATGGCATACGGTCTGGTGGTGAGAAAATTTACCAAGTATTTGATAATCAATTTCCAGCATCTTTAAAAAGGCTGCAGTTTGACAAACATTTATCAATGGACAATGTGCGGAAACTAATAACTGAAGCAGATGGTTATCAACCTCATCTCATAGCTCCTGAGCAAGGATACCGACGCCTTATCGAATCTTGCTTGGTATTAATTAGGGGCCCTGCTGAAGCAGCTGTTGATGCGGTTCACGGAATTTTGAAGGATTTGATTCAGAAATCTATGAGTGAGACAATAGAATTAAAGCAGTATCCCACCTTGAAGGTAGAACTCGGAAGTGCAGCTGTTGATTCGTTGGAGCGGATGAGAGAAGAAAGTAAGAAAGCAACTCTGCTTTTGGTGGACATGGAGTATGGCTATTTGACGGTTGAATTTTTCCGCAAACTTCCCCAAGACGCAGAAAAGGGTGGAAATCCCACTCATTCACTTTTCGACAGATATAATGATGCTTATCTTCGTCGAATTGCTACCACTGTCTTGTCCTACGTGAACATGGTATGTGCGACCCTGCGGAATACTATTCCCAAGTCTGTAGTTTATTGTCAAGTGCGTGAGGCTAAGCGCAGCTTACTGGATCATTTCTTTACAGAATTGGGGAAAAAGGAGGGAAAACAACTAGCTGCACTTCTAAATGAGGACCCAGCAATAATGCAGCGCCGCACCTCCCTTGCAAGGAGGCTAGAGCTATACAGAAGTGCACAATCAGAAATTGAGGCAGTTGCATGGGAAAGGAAGAGTATAGTTTTTGACATGGATGAGGGAAGTCGTTCTCTCCTTTCCGATGACAGGCTTATGCTCCTGGGCTTGGAAGAAGAAAATGGTATTGAATATAGTGCGGGGAATCGAACCCCGTGCCTCTCGCATGCGAAGCGAGCGCTCTACCATATGAGCTACACCCCCATGACTTTTCCGCACGACACAATCAGATGCGATGAGTAG 2139 0.4437 MENLIQLVNKIQRACTALGDHGEESAMPTLWDALPSIAVVGGQTILDAAGNYEQMRIDVTIVVSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIDEGREYAEFMHLPRKKFTDFAAVRQEIADETDRETGRNKGISSVPIHLSIYSPHVVNLTLVDLPGLTKVAVEGQPDSIVQDIENMVRSFIEKPNCIILAISPANQDLATSDAIKISREVDPKGERTFGVLTKIDLMDKGTDATEVSEHSLDTLNKEFGLILEGKAYKLNFPWIGVVNRSQADINKQVDMIAARKRENEYFANTPEYRHLASRMGSVHLGKVLSKHLETVIKSRIPGLQSLINKTIIELETELNRIGKPIAADTGGKLYTIMEICRTFDQIFKDHLDGIRSGGEKIYQVFDNQFPASLKRLQFDKHLSMDNVRKLITEADGYQPHLIAPEQGYRRLIESCLVLIRGPAEAAVDAVHGILKDLIQKSMSETIELKQYPTLKVELGSAAVDSLERMREESKKATLLLVDMEYGYLTVEFFRKLPQDAEKGGNPTHSLFDRYNDAYLRRIATTVLSYVNMVCATLRNTIPKSVVYCQVREAKRSLLDHFFTELGKKEGKQLAALLNEDPAIMQRRTSLARRLELYRSAQSEIEAVAWERKSIVFDMDEGSRSLLSDDRLMLLGLEEENGIEYSAGNRTPCLSHAKRALYHMSYTPMTFPHDTIRCDE 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01972 712 PANTHER DYNAMIN 2 640 IPR022812 -
Spst4g01972 712 PRINTS Dynamin signature 201 219 IPR022812 -
Spst4g01972 712 PRINTS Dynamin signature 151 168 IPR022812 -
Spst4g01972 712 PRINTS Dynamin signature 54 72 IPR022812 -
Spst4g01972 712 PRINTS Dynamin signature 79 96 IPR022812 -
Spst4g01972 712 PRINTS Dynamin signature 220 236 IPR022812 -
Spst4g01972 712 SMART GED_2 547 640 IPR003130 GO:0003924|GO:0005525
Spst4g01972 712 SMART dynamin_3 1 285 IPR001401 GO:0003924|GO:0005525
Spst4g01972 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 342 IPR027417 -
Spst4g01972 712 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 80 89 IPR019762 -
Spst4g01972 712 Pfam Dynamin GTPase effector domain 548 640 IPR003130 GO:0003924|GO:0005525
Spst4g01972 712 Gene3D - 1 343 IPR027417 -
Spst4g01972 712 CDD DLP_1 34 334 IPR001401 GO:0003924|GO:0005525
Spst4g01972 712 Gene3D Dynamin, middle domain 366 620 - -
Spst4g01972 712 Pfam Dynamin central region 259 522 IPR000375 -
Spst4g01972 712 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 51 334 IPR030381 GO:0005525
Spst4g01972 712 ProSiteProfiles GED domain profile. 552 645 IPR020850 -
Spst4g01972 712 Pfam Dynamin family 63 232 IPR045063 -
Spst4g01972 712 FunFam Dynamin-related protein 5A 366 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01972 Spst-Chr4 60371914 60386038 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01972 - - gmx:100793097 1135.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01972 4 60371914 60386038 Spst4g01972 4 60371914 60386038 ECH