Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01968 ATGTCTCTCCTCAATCGTTTTACCCGCCAAACTCCCTCCACCGTCACGCTCCTCACGCGCCACCTCTCCTCGGCCGCATCCAAACTCCACGCAACTTACACGTTCAAACCACCGTCTTCTCTCACTCCCGAGCCCCAATGCCCCAACTCCCTTCCCACCAAACCCAACCAAAAAAAGCTCAAGCCCAAGTACCGGCCTCCCTCCTCCCTCGACCGGGCCGGCCGCAAGCCGGTCCGTTCTGTTGACCTGCCTTTCGATTTCCGGTTCAGCTACACAGAGAGCAGCCCTAAGGTGCGGCCCATCGGGCTCAGGGAGCCTAAGTACTCACCCTTTGGGCCGGGCAGGCTCGACCGGAAGTGGACAGGAGTGTGCGCGCCAGCGGTGGACCCCACGGTTGAGAGCTTAGAGGGCGCGGAGGACCCTCAGTTGGAGGAGCAAAGGAAGAAGAAGAGAGAGTTGATTCAAGGAAAACCTCTTACCAGTAATGAGAGAAAGGCATTGGTTTCGCAATTTGAGAGAAGCAAAACTAATAGGCATGTCAATCTCGGAAGGGATGGTTTAACTCACAACATGCTGAATGTTATTCATAATCATTGGAAATTTGCTGAAGCAGTTAGAATCAAATGCATGGGTGTTCCAACTATGGACATGAAAAATATTTGTACCCAGCTTGAGGACAAAACATTTGGGAAGGTCATTTTCAGACATGGTGGTACACTTATATTATACAGAGGCAGGAATTATAATCCGAAAAAGAGACCTGTTGTTCCTCTCATGTTGTGGAAGCCCCATGAACCTGTATATCCCAGACTGATTAAGACAACAATTGATGGCTTAAGTATTAATGAAACAAAAGAAATGCGGAAGAGAGGCCTAGCTATTCCTGCTTTAACTAAACTTGCCAAAAATGGTTATTATGCTTTTTTGATACCCATGGTCAGAGATGCTTTTCTTTCCTGCGAATTGGTTCGGATAGACTGTGAGGGTCTTGAAAGGAAAGATTACAAGAAAATAGGCTGCAAACTCAGGGACATGATCCCCTGTATTCTGGTGACATTTGAGAATGAACAAATTGTGGTTTGGAGGGGCAAGGATTATAAGCCTCCAAAGGATGGATACTTTCTTAAAGATCGAGAATCATTTGATGACGACAATGATGACTTGTGTGTGGGAGAAGAGCAACAGGCTATGTAA 1194 0.474 MSLLNRFTRQTPSTVTLLTRHLSSAASKLHATYTFKPPSSLTPEPQCPNSLPTKPNQKKLKPKYRPPSSLDRAGRKPVRSVDLPFDFRFSYTESSPKVRPIGLREPKYSPFGPGRLDRKWTGVCAPAVDPTVESLEGAEDPQLEEQRKKKRELIQGKPLTSNERKALVSQFERSKTNRHVNLGRDGLTHNMLNVIHNHWKFAEAVRIKCMGVPTMDMKNICTQLEDKTFGKVIFRHGGTLILYRGRNYNPKKRPVVPLMLWKPHEPVYPRLIKTTIDGLSINETKEMRKRGLAIPALTKLAKNGYYAFLIPMVRDAFLSCELVRIDCEGLERKDYKKIGCKLRDMIPCILVTFENEQIVVWRGKDYKPPKDGYFLKDRESFDDDNDDLCVGEEQQAM 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01968 397 Pfam CRS1 / YhbY (CRM) domain 159 244 IPR001890 GO:0003723
Spst4g01968 397 Pfam CRS1 / YhbY (CRM) domain 282 362 IPR001890 GO:0003723
Spst4g01968 397 SUPERFAMILY YhbY-like 279 369 IPR035920 -
Spst4g01968 397 SMART CRS1_YhbY_2 279 362 IPR001890 GO:0003723
Spst4g01968 397 SMART CRS1_YhbY_2 159 244 IPR001890 GO:0003723
Spst4g01968 397 MobiDBLite consensus disorder prediction 140 158 - -
Spst4g01968 397 MobiDBLite consensus disorder prediction 133 159 - -
Spst4g01968 397 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 21 369 IPR044599 GO:0000373
Spst4g01968 397 ProSiteProfiles CRM domain profile. 157 255 IPR001890 GO:0003723
Spst4g01968 397 ProSiteProfiles CRM domain profile. 277 373 IPR001890 GO:0003723
Spst4g01968 397 SUPERFAMILY YhbY-like 158 254 IPR035920 -
Spst4g01968 397 FunFam CRS2-associated factor 1, chloroplastic 278 372 - -
Spst4g01968 397 Gene3D - 158 255 IPR035920 -
Spst4g01968 397 Gene3D - 279 373 IPR035920 -
Spst4g01968 397 MobiDBLite consensus disorder prediction 36 77 - -
Spst4g01968 397 FunFam CRS2-associated factor 1, chloroplastic 158 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01968 Spst-Chr4 60319952 60323647 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01968 - - gmx:100789954 750.74