Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01941 ATGACTACTGCAAATGGGGGGACTGAGACTGAGGAGCAAAAGAGAAAAACTAATGATCCTTTTCTTAAGCATGGAGGACACCAAAACAAGCCAAGATCACCTAGATTGTGCACACCTATTAAGAAGGAATGGTCAGAGGGTTCGCCAAATGACAATGTGATTGGTAATCAGGATAATGGTTTGAATAGGTATGTTATTTCCTTAGCTGGATCTGAACTTCCTAGTTCTAGTGTGTGTTCTACTATAGATTCTGAACACTTTGTTGAAGTGTTTCCTGTTGCTATTAGGAATTATAAGAACAAGAATACAGACTTAGTTAGCCACCCGCAAAATTCAAGACAGACAAGGAATCAATTGACTATTGAGTCTAAGTATGATGGCTTGAGCAGAGAAGTTGTTCCCAAGGTTGAAGAACATATACCATTCAGATTAAGCAAAGGACTTAAGAGAAATAATTCTGAAATTTGGGGCCTGAAGCCGCTGTCTGACAAGAGTGTAAATCATAACCCACTGAAAGTCTCAGCAGATATAAGCAATATGGGCAAGACTATAATCTCAAACAATGCACATCTTATCAGCAGTAAAATTGATAGTACTTCATCTGCATATAATTATCCTCAATTGATTGTAAAGCAAACAAAGAAGGGAAAGGGGGTTATTTGTGAAGATTTAGACAAAAGCTTCAGCATTGTAGGAACACTTAAGAATCAGGAGGATGAGAAACCTTCTTCTTTTGCAGTCAAGTTTCAATCTGATATACTGCTGAGATCAAATGTTGATGATAAGTCTTTATTGGAAGGAACTGTAGTGTCTGATAGCAATGGAATCAACTTAAGGGAGTGGCTGAAGACTGAATGTCATAAAATGAAGAAATTAGGAAAGGTTCATATATTTAAGCAGATATTGAAATCGGTTCAATTGGCACACTCTCAAGGACTTGTTTTGCTCGACTTTCGACCATCATTTTTCACTTTATTGCCTTCTAGTAAGATTCAATACATTGGTTCATATGGCCCACCAGAGTTAGGTGATGAAGTCATGACCTGCAATGTGACTAGGAAAAGGCCTCTGGAAAAGAATACCTGTGCCTGCCTATGTTCGAGTACAAAGCAGCAAAAACTATTTGAGGAGACAGGATCTTTTAGGCAGCAGCGTCACTGCTCCTGTATTCATGGCTTCAGGACAACAGTGAATCAAACTGACGCTGACACGATCAGACCCTTGGAATCAAGGACTAAAGTAAGTATGTGCCAAAATGGTACTAGTTGTCAAGGTACGGGTACCAAAGAAAACCTGTTTCCGTCTGCTATCAATCAGTTAGAAAAGCAGTGGTATTTTAGTCCAGAAATGCTGAACGATGGAGTCTGCACAATGTCATCTAATATTTATAGCCTTGGAGTTCTTCTTTTTGAGTTGCTCTGCAATATTGAGTCATGGGAGGCCTATTCAACTGCAATGTTGGAGTTGTGCCATAGAATCTTACCACCTAAATTTCTAGCAGAAAATCCAATGGAAGCTGGCTTTTGTCTTTGGCTTCTGCATCCTGACCAGTCCTCTCGTCCCAATGCCAGGTCATGCTACCATAGTAAGCACCTTGGAACTTCTTGGTTGGCTCTTCGGAAACGAAAGGTCATTCTTGAATCTGAATTTATACGCCAATTAGAGGAATCAAATTTTATAGATGATGTTGGAATATCTGATGATGAGGCTGAAACAGAGAAATTACTATATTTTCTGACTTCACTCAAAGAAGAAAAGATAGAACAGGCAGCCAAGTTGGAAGAAGAGCTAAATTTCTTGAATGAAGATATTCAGGAGGTAGAAAGAAGTCATTCATTTGGGACAGATTCGGTATTTCCTTTAGCAAAAATGAACAGTTCTGAAGTGAGAGAGAACAATTTACATTTTCAAGATTGTTCTAGTTCAGACATTAGTAGATCCATTCAAAGGTCATTTGGTGATGAATATAGATTTATGAGTAACATAAATCAGCTAGAAAATTCTTACTTTTCTATGAGAATCAGAGTCCTGCCAAAAGAGACTTCATCTATTTCAAGCAATGATAAAAATTTGATGGAAAGTAGATGGAGGATGCCTCAAGTAGAGCATCCTAATAAGGAGCCTAGAAGAATTCAAACTTCTGTTGGTTGTCTAGGATCCTTCTTTGAAGGTTTATGCAAGTTCGCTCGGTACAGCAAGTTTGAAGAGTGTGGCAGACTAAGAAATAGAGATCTGCTTAGTTCTTCCAATGTAATGTGTGCTTTAAGTTTCGACCGTGATGAGGATTATATTGCAGCGGGAGGAGTTTCAAAGAAAATCAAGATTTTTGACCTCAATGCTATTTCAAGTGATTCTGTTGACATCCAGTACCCAGTGGTTGAGATGTCAAATAAATCAAAGCTTAGTTGTGTGTGCTGGAACACTTACATAAAAAATCATCTGGCATCTACTGACTATGATGGTGTGGTTCAGATGTGGGATGCAGACACTGGTCAGCCATTGTCCCAATACATGGAGCACCAGAAGAGAGCATGGTCTGTTCATTTTTCTCAGTCAGACCCAAAAATGTTTGCTAGTGGAAGTGACGACTGCTCTGTCAAATTGTGGAATATCAGCGAGAGAAATTCTCTGGGAACCATCTGGAACCATGCCAATATATGCTGTGTTCAGTTCTCTTCTTACTCAACAAATCTTTTATTTTTTGGATCAGCTGATTACAAGGTTTATGGTTATGATCTTCGTCACACTAGGGTTCCGTGGTGCACATTACCTGGTCATGGCAAAGCTGTTAGCTATGTAAAATTTATAGATGCTGAGACAGTTGTCTCTGCTTCCACTGACAACTCTTTGAAGCTTTGGGACCTGAAGAAAACCAGCTCTTCTGGTTTGCCATCTGATGCATGTGTCTTAACCTTTAAAGGTCATAGTAATGAAAAGAATTTTGTGGGACTATCTGTTTTGGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTGTACTGTTATTACAAATCACTGCCAGTGCCAATTGCTACTCACAAATTTGAGTCAATTGATCCCATTTTGGGTCATCTAAATAGTGGTGATAATTATGGACAGTTTGTGTCTAGTGTTTGCTGGAGAAAGAAATCAAATATGCTTGTTGCCGCCAACTCAGTTGGAATTGTGAAACTGTTGCAGATGCTGGAGCTTGCAACTTCTCTTTCAATATCATGTGACTAG 3225 0.3898 MTTANGGTETEEQKRKTNDPFLKHGGHQNKPRSPRLCTPIKKEWSEGSPNDNVIGNQDNGLNRYVISLAGSELPSSSVCSTIDSEHFVEVFPVAIRNYKNKNTDLVSHPQNSRQTRNQLTIESKYDGLSREVVPKVEEHIPFRLSKGLKRNNSEIWGLKPLSDKSVNHNPLKVSADISNMGKTIISNNAHLISSKIDSTSSAYNYPQLIVKQTKKGKGVICEDLDKSFSIVGTLKNQEDEKPSSFAVKFQSDILLRSNVDDKSLLEGTVVSDSNGINLREWLKTECHKMKKLGKVHIFKQILKSVQLAHSQGLVLLDFRPSFFTLLPSSKIQYIGSYGPPELGDEVMTCNVTRKRPLEKNTCACLCSSTKQQKLFEETGSFRQQRHCSCIHGFRTTVNQTDADTIRPLESRTKVSMCQNGTSCQGTGTKENLFPSAINQLEKQWYFSPEMLNDGVCTMSSNIYSLGVLLFELLCNIESWEAYSTAMLELCHRILPPKFLAENPMEAGFCLWLLHPDQSSRPNARSCYHSKHLGTSWLALRKRKVILESEFIRQLEESNFIDDVGISDDEAETEKLLYFLTSLKEEKIEQAAKLEEELNFLNEDIQEVERSHSFGTDSVFPLAKMNSSEVRENNLHFQDCSSSDISRSIQRSFGDEYRFMSNINQLENSYFSMRIRVLPKETSSISSNDKNLMESRWRMPQVEHPNKEPRRIQTSVGCLGSFFEGLCKFARYSKFEECGRLRNRDLLSSSNVMCALSFDRDEDYIAAGGVSKKIKIFDLNAISSDSVDIQYPVVEMSNKSKLSCVCWNTYIKNHLASTDYDGVVQMWDADTGQPLSQYMEHQKRAWSVHFSQSDPKMFASGSDDCSVKLWNISERNSLGTIWNHANICCVQFSSYSTNLLFFGSADYKVYGYDLRHTRVPWCTLPGHGKAVSYVKFIDAETVVSASTDNSLKLWDLKKTSSSGLPSDACVLTFKGHSNEKNFVGLSVLDGYIACGSESNEVYCYYKSLPVPIATHKFESIDPILGHLNSGDNYGQFVSSVCWRKKSNMLVAANSVGIVKLLQMLELATSLSISCD 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01941 1074 MobiDBLite consensus disorder prediction 1 37 - -
Spst4g01941 1074 SMART WD40_4 916 954 IPR001680 GO:0005515
Spst4g01941 1074 SMART WD40_4 830 870 IPR001680 GO:0005515
Spst4g01941 1074 SMART WD40_4 965 1004 IPR001680 GO:0005515
Spst4g01941 1074 SMART WD40_4 742 777 IPR001680 GO:0005515
Spst4g01941 1074 SMART WD40_4 788 827 IPR001680 GO:0005515
Spst4g01941 1074 SMART WD40_4 1015 1061 IPR001680 GO:0005515
Spst4g01941 1074 SMART WD40_4 873 912 IPR001680 GO:0005515
Spst4g01941 1074 Coils Coil 583 610 - -
Spst4g01941 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 794 836 IPR001680 GO:0005515
Spst4g01941 1074 Gene3D Transferase(Phosphotransferase) domain 1 274 537 - -
Spst4g01941 1074 PANTHER PROTEIN SPA1-RELATED 2 11 1062 IPR044630 GO:0009640
Spst4g01941 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 923 963 IPR001680 GO:0005515
Spst4g01941 1074 ProSitePatterns Trp-Asp (WD) repeats signature. 941 955 IPR019775 -
Spst4g01941 1074 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 837 872 - -
Spst4g01941 1074 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 923 956 - -
Spst4g01941 1074 ProSiteProfiles Trp-Asp (WD) repeats profile. 837 879 IPR001680 GO:0005515
Spst4g01941 1074 SUPERFAMILY WD40 repeat-like 749 1061 IPR036322 GO:0005515
Spst4g01941 1074 SUPERFAMILY Protein kinase-like (PK-like) 275 532 IPR011009 -
Spst4g01941 1074 Pfam WD domain, G-beta repeat 831 870 IPR001680 GO:0005515
Spst4g01941 1074 Pfam WD domain, G-beta repeat 922 954 IPR001680 GO:0005515
Spst4g01941 1074 MobiDBLite consensus disorder prediction 9 26 - -
Spst4g01941 1074 Gene3D - 721 1064 IPR015943 GO:0005515
Spst4g01941 1074 PRINTS G protein beta WD-40 repeat signature 857 871 IPR020472 -
Spst4g01941 1074 PRINTS G protein beta WD-40 repeat signature 814 828 IPR020472 -
Spst4g01941 1074 PRINTS G protein beta WD-40 repeat signature 941 955 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01941 Spst-Chr4 60030327 60036340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01941 745 913 Miscellaneous Gene Families AT5G08390 26.901 5.44e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01941 K16240 - gmx:100799267 1646.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01941 4 60030327 60036340 Spst4g01941 4 60030327 60036340 ECH