Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01940 ATGTGGAGGTTCACCATCTTCACACTCACACTCATCCTCCACCCAGCCACCTCCACACTCACCAACAGAAGGCTCCTTCGCCAACCCTTCCTCCCTACATCAACCTCCGCCAACCCCCTCGCCGTTGCCTTCGCCGCCGCCACCTGCGCCCTCCTCCTCCTCGCCGTCTCTGCTCTCCTCTACTGCCTCCGTAGACGCAAGACCGTCTCCGCTGACCCCACCGTCAACTTATTTCCCTGCCATGCCGCCGCTGCCTCTCAGAAAGCGACGAACACCACAAACTCGCCGGAGCTCGAGCCGCTGCTCGCGCGACTAGCCTCAGACGAAGAACAACAACTCTGCTCGGCGAGAGGGAAGATTTCAGAATCTGAACTTGTATGTGAACCAGAGGAATCAAATTCTGAAGATGATGTAGTATCTGATAATGAGGCTGAAACCGAGGTTTTCCTACATTTTCTAATTTCACTCAGAGAAGAAAAAAAGAAACAAGCAGCCAAGTTGGAAGAAATGCTGAATTTCTTGAATGAAGATATTAAGGAGGTAGAAAGAAGGTATTCAATTGGGATAGATTCAGTATTTCCTTTGGCACTAAAGAAAAATCCTGAAGTGAGAGGAAATGGTTCACATTCTCAAGATTCTTCCAATTCAGACATTAGCAGATTGATACGTAGGTCATTTGTTGATGAAGAAAGATTAATGAGTAACATAAATCAGCTAGAGAGTTCATACTTTTCCGCAAGATCCCAAGTCCTGCCGAAAGAGGTTTCATCTGTTTCAAGCAATGATAAAAATGTGATGGAAAGTGAATGCAGGCTGCCTCATGTAGAGAATGTTGATAGGGAGCCTGAAAGAATTCAGAGTTCTGTAGCTTCTCTAGCATCCTTCTGTGAAGGTTTATGCAAGTTTGCTCGTTACAGCAAGTTTGAAGAGTGTGGCAGATTAAGTGATAGAAATCAGTTTAGTTCTAGCAATATAATATGTGCTTTAAGTATTGACCGTGATGAAGATTACATTGCAGCAGCAGGAGTTTCAAGGAAAATAAAGATTTTTGACCTCAGTGCATTTTCAAGTGATTCTGTTGACATCCAGTACCCAGTAGTTGAGATGTCAAATGAATCAAAGCTTAGTAGTCTGTGTTGGAACACTTACATACAAAATCATCTGGCATCTGCTGACTATGGTGGTGAGATTCAGATGTGGGATGCAGGCACTGGTCAGTGTTTATCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCTCTGTCAGACCCAAAAACGTTTGCTAGTGGAAGTGATGACTGCTCTAGAAATTCTCTGGAAACTATCAGTATGCCTGCCAATATATGCTGTGTTCAGTTCTCTCCTCCATCGACAAATCTTTTATTTTTTGGATCATCTGATCACAAGGCTTATGGTTATGATCTTCGTCACACTAGAATCCCTTGGTGCACATTAGTTGGTCACGGGAAATCTGTGAGCTATGTAAAATTTATAGATGCTGACGCAGTTGTCACTGCTTCCACTGACAACTCTTTGAAGCTTTGGGACCTGAAGAAAACCAGTTATTCTGATTTGTCCTCTGATGCTTGTGACTTAACCTTCAAAGGACATAGCAATGAAAAGAATTTCGTGGGATTATCTGTTTCAGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTATACTGTTATCACAAATCACTGCCAGTGCCAATTGCTACTCATGAATTTGAGTCAACTGATCCCATTTCTGACTACCCAGATAGGGGACAGTTTGTTTCTAGTGTTTGCTGGAGAAAGAAATCTAACATGCTTGTAGCCGGAAACTCAAATGGAATTGTGAAACTACTGCAGATGCAGATCCTCCAAAGTGCAAAACAGAAGTTTTCCCCTCAGAAACTTCTCATCTATAGGGTGTGTAACAATTCACGAATCAACAAGCCAGGGGCACCAGACAGACCTGAACTATCTGCTTGGGGTCTGAAGTCAGACTAA 2010 0.4338 MWRFTIFTLTLILHPATSTLTNRRLLRQPFLPTSTSANPLAVAFAAATCALLLLAVSALLYCLRRRKTVSADPTVNLFPCHAAAASQKATNTTNSPELEPLLARLASDEEQQLCSARGKISESELVCEPEESNSEDDVVSDNEAETEVFLHFLISLREEKKKQAAKLEEMLNFLNEDIKEVERRYSIGIDSVFPLALKKNPEVRGNGSHSQDSSNSDISRLIRRSFVDEERLMSNINQLESSYFSARSQVLPKEVSSVSSNDKNVMESECRLPHVENVDREPERIQSSVASLASFCEGLCKFARYSKFEECGRLSDRNQFSSSNIICALSIDRDEDYIAAAGVSRKIKIFDLSAFSSDSVDIQYPVVEMSNESKLSSLCWNTYIQNHLASADYGGEIQMWDAGTGQCLSQYMEHQKRAWSVHFSLSDPKTFASGSDDCSRNSLETISMPANICCVQFSPPSTNLLFFGSSDHKAYGYDLRHTRIPWCTLVGHGKSVSYVKFIDADAVVTASTDNSLKLWDLKKTSYSDLSSDACDLTFKGHSNEKNFVGLSVSDGYIACGSESNEVYCYHKSLPVPIATHEFESTDPISDYPDRGQFVSSVCWRKKSNMLVAGNSNGIVKLLQMQILQSAKQKFSPQKLLIYRVCNNSRINKPGAPDRPELSAWGLKSD 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01940 669 Coils Coil 150 184 - -
Spst4g01940 669 SUPERFAMILY WD40 repeat-like 323 622 IPR036322 GO:0005515
Spst4g01940 669 ProSitePatterns Trp-Asp (WD) repeats signature. 507 521 IPR019775 -
Spst4g01940 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 489 529 IPR001680 GO:0005515
Spst4g01940 669 PANTHER PROTEIN SPA1-RELATED 2 119 624 IPR044630 GO:0009640
Spst4g01940 669 Gene3D - 295 626 IPR015943 GO:0005515
Spst4g01940 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 489 522 - -
Spst4g01940 669 SMART WD40_4 482 520 IPR001680 GO:0005515
Spst4g01940 669 SMART WD40_4 439 478 IPR001680 GO:0005515
Spst4g01940 669 SMART WD40_4 313 351 IPR001680 GO:0005515
Spst4g01940 669 SMART WD40_4 362 401 IPR001680 GO:0005515
Spst4g01940 669 SMART WD40_4 531 570 IPR001680 GO:0005515
Spst4g01940 669 SMART WD40_4 584 623 IPR001680 GO:0005515
Spst4g01940 669 SMART WD40_4 404 438 IPR001680 GO:0005515
Spst4g01940 669 Pfam WD domain, G-beta repeat 488 520 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01940 Spst-Chr4 60023115 60028952 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01940 K16240 - gmx:100802144 760.37