Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst4g01863 | ATGATGGGTACTAAAACTCTGTTCAAGTGGCCAAAGAAAATCACGAATTCCCTAGTTGTGCAGTTAATTAAAGCAGAAAAGGACGTGCACAAAGCTGTTAGTTTGTTTGATTCTGCAACTGCTGAATATAGTAGTGGGTTTCGTCATGATCTTGAGACTTTTGGTCTCATGATCTCTAGGTTAGTTGCTGTGAATCAGTTTAGGTCAGCAGAAGGAATGATGGAGAGAATGAAGCAAGAAGATTGTAAGGTTACAGAGGACATACTTTTAACTATATCCAGGGGTTATGGGCGCGTGCATAGGCCACTTGATGCCATCAGAATCTTCCACAAGATAGAAGGTTTTCAGCTTAGGCCCACTGAAAAGGCTTACCTTACAATACTGGATATTCTTGTGGAGGAAAACCATGTAAAGAGGGCTATTGGTTTTTACAGGGAGATGAGAGAAATGGGCTTTCCACCCAGTGTTGTTTCCCTCAATATTTTGATCAAGGCCCTCTGCAAAAGCAAGGACACTGTTGATTCTGCCTTACGGATATTTCGGGAGATGCCAGACCGTGGGTGCCAGCCTGATTCATATACATATGGTACATTGATTAATGGGCTGTGTAGACTCGGAAGTATCGGTGAGGCAAAGGAACTATTCAAAGAAATGAAGCAGAAAGGTTTTGCAGCTTCTGTTGTTACCTATACTAGTTTGATACATGGATTGTGTCAGTCTAATAATTTGGATGAATCTATTGGATTGCTTGAAGAAATGAAAAGAAATGACATTGAACCAAATGTTTTTACTTATAGTTCTCTTATGGATGGTTTATGCAAAGGTGGTCATTCATTACAAGCAATGGGGTTATTGGAAGTGATGGTCAGAAAGAACCATTTGCCGAACATGGTTACTTATAGTTCTTTAATCAGTGGACTGTGTAAAGAAGGGAAGCTTTGTGAAGCTGTGGAGATTCTTGATAGGATGAGGATTCAAGGCTTGAAACCAAGTGCAGGGTTGTATGGAAAAATCATAAGTGGCTTCTGTGCTGCAGGCAGCTATCAAGAAGCTGCAAACTTCATTGATGAGATGGTGCTAGGTGGTATCTCACCAAATCGAGCAAGTTGGAGCCTTCATGTTAGGATGCATAACATGGTAGTCCAGGGCCTTTGTAATAATGTTGATGCACCTCGTGCATTTCTGTTGTATCTCAGTATGCGTACTAGGTGCATCTCTGTTGAAATTGGCACTTTTGATTGTCTAGTCAAAAGTTTTTGTAAGAGAGGAGACTTGCACAAAGCTGCTCGGATTCTTGATGAGATGGTGTTAGATGGATGCATTCCAGACGAACAAATATGGAATGTTGTCATCGGTGGAGTTTTGAATCGAAAAAAAGTGAGAGAAGCCACTGAGCTGTTACTGGTTGAGCTGAGGCAGAAGTTTGTTGAAGCTGAAAGTTGA | 1443 | 0.4109 | MMGTKTLFKWPKKITNSLVVQLIKAEKDVHKAVSLFDSATAEYSSGFRHDLETFGLMISRLVAVNQFRSAEGMMERMKQEDCKVTEDILLTISRGYGRVHRPLDAIRIFHKIEGFQLRPTEKAYLTILDILVEENHVKRAIGFYREMREMGFPPSVVSLNILIKALCKSKDTVDSALRIFREMPDRGCQPDSYTYGTLINGLCRLGSIGEAKELFKEMKQKGFAASVVTYTSLIHGLCQSNNLDESIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSLQAMGLLEVMVRKNHLPNMVTYSSLISGLCKEGKLCEAVEILDRMRIQGLKPSAGLYGKIISGFCAAGSYQEAANFIDEMVLGGISPNRASWSLHVRMHNMVVQGLCNNVDAPRAFLLYLSMRTRCISVEIGTFDCLVKSFCKRGDLHKAARILDEMVLDGCIPDEQIWNVVIGGVLNRKKVREATELLLVELRQKFVEAES | 480 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst4g01863 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 155 | 190 | IPR002885 | - | |
| Spst4g01863 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 226 | 260 | IPR002885 | - | |
| Spst4g01863 | 480 | Pfam | PPR repeat family | 226 | 274 | IPR002885 | - | |
| Spst4g01863 | 480 | Pfam | PPR repeat family | 154 | 204 | IPR002885 | - | |
| Spst4g01863 | 480 | NCBIfam | pentatricopeptide repeat | 298 | 331 | IPR002885 | - | |
| Spst4g01863 | 480 | NCBIfam | pentatricopeptide repeat | 335 | 366 | IPR002885 | - | |
| Spst4g01863 | 480 | NCBIfam | pentatricopeptide repeat | 263 | 296 | IPR002885 | - | |
| Spst4g01863 | 480 | NCBIfam | pentatricopeptide repeat | 193 | 225 | IPR002885 | - | |
| Spst4g01863 | 480 | NCBIfam | pentatricopeptide repeat | 411 | 444 | IPR002885 | - | |
| Spst4g01863 | 480 | NCBIfam | pentatricopeptide repeat | 228 | 262 | IPR002885 | - | |
| Spst4g01863 | 480 | NCBIfam | pentatricopeptide repeat | 157 | 192 | IPR002885 | - | |
| Spst4g01863 | 480 | NCBIfam | pentatricopeptide repeat | 123 | 155 | IPR002885 | - | |
| Spst4g01863 | 480 | SUPERFAMILY | HCP-like | 92 | 259 | - | - | |
| Spst4g01863 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 120 | 154 | IPR002885 | - | |
| Spst4g01863 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 408 | 442 | IPR002885 | - | |
| Spst4g01863 | 480 | Pfam | PPR repeat | 291 | 324 | IPR002885 | - | |
| Spst4g01863 | 480 | Pfam | PPR repeat | 410 | 436 | IPR002885 | - | |
| Spst4g01863 | 480 | FunFam | Pentatricopeptide repeat-containing protein At5g39710 | 174 | 280 | - | - | |
| Spst4g01863 | 480 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 16 | 292 | - | - | |
| Spst4g01863 | 480 | Gene3D | Tetratricopeptide repeat domain | 375 | 479 | IPR011990 | GO:0005515 | |
| Spst4g01863 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 296 | 330 | IPR002885 | - | |
| Spst4g01863 | 480 | Gene3D | Tetratricopeptide repeat domain | 2 | 115 | IPR011990 | GO:0005515 | |
| Spst4g01863 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 261 | 295 | IPR002885 | - | |
| Spst4g01863 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 331 | 365 | IPR002885 | - | |
| Spst4g01863 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 50 | 84 | IPR002885 | - | |
| Spst4g01863 | 480 | Pfam | PPR repeat | 124 | 152 | IPR002885 | - | |
| Spst4g01863 | 480 | Pfam | PPR repeat | 335 | 362 | IPR002885 | - | |
| Spst4g01863 | 480 | Pfam | PPR repeat | 53 | 82 | IPR002885 | - | |
| Spst4g01863 | 480 | Gene3D | Tetratricopeptide repeat domain | 118 | 241 | IPR011990 | GO:0005515 | |
| Spst4g01863 | 480 | Gene3D | Tetratricopeptide repeat domain | 276 | 374 | IPR011990 | GO:0005515 | |
| Spst4g01863 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 191 | 225 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst4g01863 | 46 | 467 | Glycosyltransferase | AT1G05670 | 29.717 | 9.01e-59 | 204 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst4g01863 | - | - | gmx:100794116 | 857.44 |