Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01838 ATGTCTTCTCCAAGCAAGCGGCGAGAGATGGACTTGATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCATTTCCATGGACCCAAAGAGAGTCCTTATCTTGGAGGTGTGTGGAAAGTAAGAGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTGTCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTCAATGTGTTTGAGGTGTTCTTACCTCAGCTTCTTCTGTATCCAAATCCGTCAGACCCTTTGAATGGAGAAGCTGCAGCTTTACTGATGCGTGATCGAGCCACTTATGAACAAAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAACCTGAGGACATAGGAGCTGCAACAGAAGAGCAATCCAGTGAAGAAGAGCTAAGTGAAGATGAATATGATTCTAGTGATGAACAGGTTGCTGGTAAGGCAGACCCTTAG 552 0.4239 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPKESPYLGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRATYEQRVKEYCEKYAKPEDIGAATEEQSSEEELSEDEYDSSDEQVAGKADP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01838 183 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Spst4g01838 183 SMART ubc_7 4 148 - -
Spst4g01838 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Spst4g01838 183 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
Spst4g01838 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Spst4g01838 183 MobiDBLite consensus disorder prediction 156 172 - -
Spst4g01838 183 CDD UBCc 7 143 IPR000608 -
Spst4g01838 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Spst4g01838 183 MobiDBLite consensus disorder prediction 150 183 - -
Spst4g01838 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Spst4g01838 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01838 Spst-Chr4 58732502 58734840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01838 3 150 Miscellaneous Gene Families AT3G17000 22.930 5.31e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01838 K10576 - gmx:100804969 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01838 4 58732502 58734840 Spst4g01838 4 58732502 58734840 ECH
Spst1g01092 1 13323928 13326314 Spst4g01838 4 58732502 58734840 PCT