Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01821 ATGAAAAATAAATACTATATACATCTCGTGGACCGCTTGAGTATTTTTTGTCCATATTCTTGCGCACTTCCGAGTCGAATCCCTTTGTTTCCGCAACAGATCCTCTGTTTTTACTATCCAATGGAGAATGTAGATGATGGAAAAGAATCATCAAATAGTGTCAATGAAGAAGAAACAACTAATTCTGCACTTATTTGTGGCCTTCCAGATGATATTTCTCTTATGTGCCTGGCAAGAGTTCCTAGAAAATATCATTCAGTCCTGAAGTGTGTCTCAAAGAGATGGAGGGACTTAATTTGCGATGAAGAGTGGTGTACTTATCGTCGGAAGCACAAACTGGATGAAACCTGGATTTATGCTCTGTGTGTGGGCAAATTAAATGATATTTTCTGTTATGTTTTGGATCCAACTGGGCCAATAAGATATTGGAAGCCCGTTGGTGGTCTTCCACCTCACATCTTAAAAAGAAAAGGCATGGGGTTTGAAGCTTTGGGAAATAAGCTATTCTTATTGGGTGGTTGTAGCTGGTCAGTTGATTGTACTGATGAGGTTTATTCATATGATGCTTCCTCAAATTGTTGGGTTCAAGCTACTTCCTTGTCAGCTCCTAGGTGCTTCTTTGCTAGTGAAGTTTTGGATGAAAAAATATATGCTATTGGAGGACTAGTTTCAAAGTCACGCGATTCTCATTCTTGGGATACTTTTGATCCTCTGACAAATTGTTGGACATCTCAGAGAGATCCTGTTATTATTTCTGATTCTGAAGATTCAATGGTTCTTGATGGGAAAATATATGTCCGATGTTCCAGATATCCTGTATCTCCTCATGTATTTGCTATTGAATATGAACCATCAAGTGACACATGGCAGTATGCAGATGCTGACATGGTTTCTGGGTGGACAGGCCCTTCAGTTGTTGTGGATGGCACCCTCTATGTCTTGGATGAAAGTTTGGGAACCAGGTTAACAATGTGGCATAAAGAGAAACGCCAGTGGATACCGGTTGGAAAACTATCACCATTGCTTACTAGACCACCTTGTCAGCTTGTTGCTGTTGGTAAAAGCATTTTCATTATTGGGAATTCGCTTAGCACTGTGGTTGTTGATGTTAGTGATTTGGGGAATGAGGGCCAGGTGATGATGGGTTCTTCAATACCAGGATTGTTATCTGATATCACTGTATTAAGTTGTAAAAGCTTGACAATCTGA 1209 0.3995 MKNKYYIHLVDRLSIFCPYSCALPSRIPLFPQQILCFYYPMENVDDGKESSNSVNEEETTNSALICGLPDDISLMCLARVPRKYHSVLKCVSKRWRDLICDEEWCTYRRKHKLDETWIYALCVGKLNDIFCYVLDPTGPIRYWKPVGGLPPHILKRKGMGFEALGNKLFLLGGCSWSVDCTDEVYSYDASSNCWVQATSLSAPRCFFASEVLDEKIYAIGGLVSKSRDSHSWDTFDPLTNCWTSQRDPVIISDSEDSMVLDGKIYVRCSRYPVSPHVFAIEYEPSSDTWQYADADMVSGWTGPSVVVDGTLYVLDESLGTRLTMWHKEKRQWIPVGKLSPLLTRPPCQLVAVGKSIFIIGNSLSTVVVDVSDLGNEGQVMMGSSIPGLLSDITVLSCKSLTI 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01821 402 SMART fbox_2 68 108 IPR001810 GO:0005515
Spst4g01821 402 Pfam Kelch motif 156 201 IPR006652 GO:0005515
Spst4g01821 402 Pfam Kelch motif 203 245 IPR006652 GO:0005515
Spst4g01821 402 SUPERFAMILY Kelch motif 130 363 IPR015915 GO:0005515
Spst4g01821 402 Pfam F-box domain 66 102 IPR001810 GO:0005515
Spst4g01821 402 SUPERFAMILY F-box domain 63 104 IPR036047 GO:0005515
Spst4g01821 402 Gene3D - 113 377 IPR015915 GO:0005515
Spst4g01821 402 PANTHER OS02G0202900 PROTEIN 47 373 IPR045887 -
Spst4g01821 402 SMART kelc_smart 215 261 IPR006652 GO:0005515
Spst4g01821 402 SMART kelc_smart 167 214 IPR006652 GO:0005515
Spst4g01821 402 CDD F-box_AtAFR-like 64 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01821 Spst-Chr4 58394511 58398272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01821 68 343 Miscellaneous Gene Families AT4G33900 28.146 9.69e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01821 - - pvu:PHAVU_010G098100g 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01821 4 58394511 58398272 Spst4g01821 4 58394511 58398272 ECH