LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst4g01820	ATGCAAGCACTATGTTCAGATTGCACTCTTCAGGTGCCCAGATTCTCAATTAAAGCAACTACTCCAAATTTTGCATCTTATCTGTCCACCCTGAGGCCCTCCAATGCTGGAACCAGATTGAGTTTCAGTTTTGGTTGTGGGATTTACAAACCCCATAGGATGAGTAGGTGTGATGGCTTTGGGGTGCTGTGTGCAGCCTCCAATGAAGAAAATGATGATGGATTTTACATGAGAAGATGTGTAGAGCTTGCAAGGAAAGCTGTTGGGTATACCAGCCCTAATCCATTGGTGGGGTGTGTTATTGTAAAGGATGGGATAGTTGTTGGTGAAGGGTTCCACCCCAAAGCAGGACAACCTCATGCTGAGGTGTTTGCTTTGAGAGATGCTGGTGATTTGGCACATAGTGCAACTGCTTATGTGAGCTTGGAACCTTGTAACCATTTTGGTAGGACGCCACCTTGTACTGAAGCTCTAATTAAAGCCAAAGTGAGTAAGGTTGTTGTTGGGATGGTGGATCCAAATCCCATAGTTGCCTTCAAAGGGGTGGAAAGATTGAGAGATGCGGGAATTGAAGTTGTTGTGGGTGTAGAGGAAGAGCTGTGCAAGAGCCTCAATGAGCCTTATATTCATCGCATGTTGACCGGAAAGCCTTTCCTTCCTTTGAGATATTCTCTTTCTGTCAATGGAAACTTTTTGGACTTACTTGGGAATGGAGCTACAGACTGTGGTGGATACTATTCAAGGCTATTACAAGAATATGATGCAGTGGTAATCTCTTCTTCCTTTTTCACTGAAAAATTGAAAGTACCTGCATCTCAAGAACCTGGAGCCAATCAACCGATTCGGATTGTAATACATAAAGATCCTAGTTCTTTAAATCAAATTCCACCAGGCATGAATGACTTTACTGGCAAGATGATAATCTTTACAGACAATAAAGCAGAAACAGCTCCAGAAGTAGCTCAACAAGGAATTGAAACTGTAGCTCTGGATCACATAAATCTGGATGTGATCTTGGATTATTGTAATAGTCAAGGATTGTGCAGTGTGCTGTTAGATATTAGGGGGAGTTTCGGTGAGTTTGAAGAGCTTGTTAAGGAGGGTATCAAAAAGAACTATATTAATAAATTTATTACAGAAATTTTGCCTGTTTGGAACAGACGTTCTGAGCCAGATCCTCTACAGACATTAAAGAGCTTAGAGCAAGGAGTGAAATTACTAAATTTGAAGTCCAAGGCCTCTGAACAGAGTGTTGTAATTGAGGGATATTTTAAATGTGAGTAA	1284	0.4136	MQALCSDCTLQVPRFSIKATTPNFASYLSTLRPSNAGTRLSFSFGCGIYKPHRMSRCDGFGVLCAASNEENDDGFYMRRCVELARKAVGYTSPNPLVGCVIVKDGIVVGEGFHPKAGQPHAEVFALRDAGDLAHSATAYVSLEPCNHFGRTPPCTEALIKAKVSKVVVGMVDPNPIVAFKGVERLRDAGIEVVVGVEEELCKSLNEPYIHRMLTGKPFLPLRYSLSVNGNFLDLLGNGATDCGGYYSRLLQEYDAVVISSSFFTEKLKVPASQEPGANQPIRIVIHKDPSSLNQIPPGMNDFTGKMIIFTDNKAETAPEVAQQGIETVALDHINLDVILDYCNSQGLCSVLLDIRGSFGEFEELVKEGIKKNYINKFITEILPVWNRRSEPDPLQTLKSLEQGVKLLNLKSKASEQSVVIEGYFKCE	427

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst4g01820	427	CDD	Riboflavin_deaminase-reductase	77	189	-	-
	Spst4g01820	427	ProSiteProfiles	Cytidine and deoxycytidylate deaminases domain profile.	71	193	IPR002125	-
	Spst4g01820	427	Gene3D	Cytidine Deaminase, domain 2	63	210	-	-
	Spst4g01820	427	FunFam	Riboflavin biosynthesis protein RibD	70	210	-	-
	Spst4g01820	427	PANTHER	CYTOSINE DEAMINASE FAMILY MEMBER	68	208	-	-
	Spst4g01820	427	Pfam	Cytidine and deoxycytidylate deaminase zinc-binding region	74	170	IPR002125	-
	Spst4g01820	427	NCBIfam	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	77	387	IPR004794	GO:0008835\|GO:0009231
	Spst4g01820	427	Gene3D	Dihydrofolate Reductase, subunit A	211	424	IPR024072	-
	Spst4g01820	427	SUPERFAMILY	Cytidine deaminase-like	73	212	IPR016193	GO:0003824
	Spst4g01820	427	ProSitePatterns	Cytidine and deoxycytidylate deaminases zinc-binding region signature.	120	158	IPR016192	GO:0008270\|GO:0016787

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst4g01820	K11752		-	gmx:100786393	696.041

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst4g01820	4	58384919	58386968	Spst4g01820	4	58384919	58386968	ECH