Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01790 ATGGGAGAAGAAGCAAAAAGGTATGCAGTGGTGACAGGAGCTAACAAGGGGATTGGTTATGGAATATGCAAGAAACTGGCTTCAAATGGAATTGTGGTGGTGCTAACTGCTAGAAATGAGAAAAGGGGTTTGGAAGCAGTGCAAAGATTGAAAGAGTTTGGTCTCTCAGACCTTCTGGTTTTTCATCAACTTGATGTTACTGACCCTCCTAGTGTTGCTGCTTTGGCACAATTCATCAAAACCAGATTTGGAAGACTTGACATCTTGGTGAACAATGCAGGTGTTCCTGGAGGACTAGTAAATGGAGAGAATGTTCTTAGGAAGAAAAGGGGCGAAATATCAGATTGGAATATAATAGTACCTCAAAATTATGAGTTGGCGGAAGAATGTGTTGAAATTAACTTTTTTGGTGCAGAAAGAGTTACAGAAGCTTTTCTTCCCCTCCTTCAATTATCCCTTTCTCCTAGGATTGTCAATGTCTCCTCTAGAAGAGGAGTATTGAAGAATATACCAAATGATTGGGCGAGAGGGGTGTTGAGTGACATTGAAAACCTTACAAACAAAAAGCTTGATGAGGTGTTGAGGGAGTTTCTGAAAGATTACAAGGCAGGATCATTGGAATCCAAGAACTGGCCACCTGTTCTTTCTGGCTACACCATGTCAAAAACAGCCTTAAATGCTTATACAAGAATGCTGGCTAAGAAGTTTCCTCGTTTTCGCATAAACTGTTTGTGCCCTGACTTTGTGAAGACTGATCTGAACCAGAATGTAGGGTTTTTAACCATTGATGAAGGTGCTGAATGCCCTGTCAGACTAGCTTTGTTGCCAGATGATGGTCCTTCTGGTCTCTTCTTCTTAAGGGATGAAGTACTTTCCTTCTTCTGA 885 0.4124 MGEEAKRYAVVTGANKGIGYGICKKLASNGIVVVLTARNEKRGLEAVQRLKEFGLSDLLVFHQLDVTDPPSVAALAQFIKTRFGRLDILVNNAGVPGGLVNGENVLRKKRGEISDWNIIVPQNYELAEECVEINFFGAERVTEAFLPLLQLSLSPRIVNVSSRRGVLKNIPNDWARGVLSDIENLTNKKLDEVLREFLKDYKAGSLESKNWPPVLSGYTMSKTALNAYTRMLAKKFPRFRINCLCPDFVKTDLNQNVGFLTIDEGAECPVRLALLPDDGPSGLFFLRDEVLSFF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01790 294 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Spst4g01790 294 PRINTS Glucose/ribitol dehydrogenase family signature 149 165 IPR002347 -
Spst4g01790 294 PRINTS Glucose/ribitol dehydrogenase family signature 237 254 IPR002347 -
Spst4g01790 294 PRINTS Glucose/ribitol dehydrogenase family signature 218 237 IPR002347 -
Spst4g01790 294 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Spst4g01790 294 Pfam short chain dehydrogenase 8 167 IPR002347 -
Spst4g01790 294 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 205 233 IPR020904 GO:0016491
Spst4g01790 294 Gene3D - 3 293 - -
Spst4g01790 294 FunFam (+)-neomenthol dehydrogenase 2 293 - -
Spst4g01790 294 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 290 - -
Spst4g01790 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Spst4g01790 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 218 237 IPR002347 -
Spst4g01790 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 163 IPR002347 -
Spst4g01790 294 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 279 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01790 Spst-Chr4 58042196 58046186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01790 10 258 Acyl Lipid Metabolism Gene Families AT1G24360 22.222 1.85e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01790 K15095 - gmx:100802560 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01790 4 58042196 58046186 Spst4g01790 4 58042196 58046186 ECH