Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01781 ATGTGGAAACTCGCGCGATTCGCCGCCGCTTCCAATATCGCCCGATCGCGGCGGTTCTCCGCCGCGATTCCCGGTCCGTGCATTGTACACAAACGCGGTGCTGACATACTCCACGATCCCTGGTTCAACAAGGATACTGGGTTTCCTTTGACTGAAAGGGATAGATTGGGGCTTCGGGGCCTCCTTCCTCCTCGTGTTATATCCTTTGAGCAGCAATATGATCGCTTTATGAATTCATTCCGATCTTTGGAGAATAATACTCAGGGGCAGCCAGATAAAGTTGTTTCCTTGGCAAAATGGAGGATTTTAAATAGACTGCATGACAGGAATGAGACTTTGTACTACAGAGTTCTTATTGATAATATTAAAGAGTTTGCTCCAATAATATATACTCCAACAGTTGGATTAGTGTGTCAAAATTATTCGGGGCTATTTAGACGTCCACGGGGAATGTATTTTAGTGCCAAAGATAAAGGAGAGATGATGTCAATGATTTATAACTGGCCAGCTCACGAGGTAGACATGATTGTCTTAACAGATGGAAGTCGAATTCTTGGCTTAGGTGACCTTGGAGTTCAGGGAATTGGAATCCCCATAGGTAAACTTGATGTGTATGTTGCTGCCGCAGAGTCACTCATGGATCTTGTGTTGATACTTCCAGTTATGTTGGATGTTGGCACCAACAATCAAAAGCTACTTGAAGACCGCCTTTATTTAGGACTACGTCAACCAAGATTGGAAGGTGAAGAGTATCTATCAATTGTAGATGAATTCATGGAAGCAGTTCATGCTCGATGGCCCAAGGCTATTGTGCAGTTTGAGGATTTCCAAATGAAGTGGGCTTTCGAAACCCTGGAAAGATATCAGAAAAGGTTTTGCATGTTTAATGATGATATACAGGGTACTGCTGGTGTTGCACTTGCTGGATTATTGGGAACTGTAAGAGCCCAAGGCCGACCACTGACTGACTTTGTAAACCAAAAGATAGTTGTGGTTGGAGCTGGGAGTGCTGGGCTCGGGGTTCTAAAAGCGGCCATCCAGTCAGTCGCAAAGATATCTGGGTGCAGCGAAATAGCTGCCAAAAGCCAATTCTATTTAATTGATAAAGATGGTCTAGTCACAACAGAAAGAAGCAATCTTGATCCAGCTGCAGCTCCATTTGCTAAAAATCTAAGAGACATAGAGGGGCTTACTGAGGGTGCTAGCATAATTGAAGTGGTTAAGAAGGTTAAGCCTCATGTGCTCCTAGGTTTATCTGGCGTTGGTGGTATTTTCAATGAGGAGGTGCTTAAGGCAATGAGAGAATCTGTTTCAACAAAACCTGCTATCTTTGCCATGTCTAACCCCACCATGAATGCTGAGTGCACCGCTCTTGATGCTTTCAAGCATGCTGGGGAAAATATAGTGTTTGCTAGTGGAAGTCCTTTCGAAAATGTAGATCTTGCTAATGGAAAAGTGGGCCATGTAAATCAAGCAAACAACATGTACCTATTCCCAGGAATTGGTTTGGGAACTCTTCTGTCAGGTGCTCACCTTATAACAGATGGAATGTTGCAAGCAGCTTCTGAATGCCTTGCTTCATACATGGCTGAGGAAGATATCTTAAACGGAATTTTATATCCATCTGTTGACAGCATACGAGATGTTACAGCCGAGGTTGGGGCTGCTGTGCTTCGAGCAGCAGTTGAAGAAGATCTGGCAGAAGGACGCGGTGATGTGGGCCCCAGAGAACTTTCCCATATGTCCAAAGATGAGACTGTGGAGTACGTCCGAAGTAATATGTGGTATCCTGTGTATTCTCCTCTTGTTCACGAAAAATGA 1821 0.4426 MWKLARFAAASNIARSRRFSAAIPGPCIVHKRGADILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYDRFMNSFRSLENNTQGQPDKVVSLAKWRILNRLHDRNETLYYRVLIDNIKEFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAHEVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAESLMDLVLILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYQKRFCMFNDDIQGTAGVALAGLLGTVRAQGRPLTDFVNQKIVVVGAGSAGLGVLKAAIQSVAKISGCSEIAAKSQFYLIDKDGLVTTERSNLDPAAAPFAKNLRDIEGLTEGASIIEVVKKVKPHVLLGLSGVGGIFNEEVLKAMRESVSTKPAIFAMSNPTMNAECTALDAFKHAGENIVFASGSPFENVDLANGKVGHVNQANNMYLFPGIGLGTLLSGAHLITDGMLQAASECLASYMAEEDILNGILYPSVDSIRDVTAEVGAAVLRAAVEEDLAEGRGDVGPRELSHMSKDETVEYVRSNMWYPVYSPLVHEK 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01781 606 ProSitePatterns Malic enzymes signature. 295 311 IPR015884 GO:0004471
Spst4g01781 606 PRINTS Malic enzyme signature 438 454 IPR001891 GO:0004470|GO:0004471
Spst4g01781 606 PRINTS Malic enzyme signature 113 137 IPR001891 GO:0004470|GO:0004471
Spst4g01781 606 PRINTS Malic enzyme signature 173 202 IPR001891 GO:0004470|GO:0004471
Spst4g01781 606 PRINTS Malic enzyme signature 329 345 IPR001891 GO:0004470|GO:0004471
Spst4g01781 606 PRINTS Malic enzyme signature 295 311 IPR001891 GO:0004470|GO:0004471
Spst4g01781 606 PRINTS Malic enzyme signature 270 288 IPR001891 GO:0004470|GO:0004471
Spst4g01781 606 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 20 298 IPR046346 -
Spst4g01781 606 FunFam Malic enzyme 297 606 - -
Spst4g01781 606 Gene3D - 297 606 - -
Spst4g01781 606 Pfam Malic enzyme, N-terminal domain 107 289 IPR012301 GO:0004471
Spst4g01781 606 SMART Malic_M_2 299 562 IPR012302 GO:0051287
Spst4g01781 606 PANTHER MALIC ENZYME-RELATED 22 600 - -
Spst4g01781 606 SMART malic_2 107 289 IPR012301 GO:0004471
Spst4g01781 606 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 299 603 IPR036291 -
Spst4g01781 606 CDD NAD_bind_1_malic_enz 299 597 - -
Spst4g01781 606 FunFam Malic enzyme 31 296 - -
Spst4g01781 606 Gene3D - 31 296 IPR037062 GO:0004471
Spst4g01781 606 Pfam Malic enzyme, NAD binding domain 299 561 IPR012302 GO:0051287
Spst4g01781 606 PIRSF ME 7 605 IPR001891 GO:0004470|GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01781 Spst-Chr4 57896904 57904515 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01781 K00028 - gmx:100811081 1132.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01781 4 57896904 57904515 Spst4g01781 4 57896904 57904515 ECH