Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01774 ATGGCTACCACTTCTGCTTCCTTCGCTCGCTTCTCCGTTATCTCGCGACCTTCTTCCGATTCAAGTTATGTCCTCTTCAACGTCGCCCCCGAACCGGAACCCCCAATTCCCGTACTGGAGAAGGCGAAAAGCGACGTGGAGAAGGTGTTCTCGGGATTCTCCAAGACCCGCAACAACCTCACCGTCATCGACGAGCTTCTCCTCTATTGGAACCTCGCCGAAACCGACCGAGTCCTCGACAAACTCGAAGAGGCTCTTTTAGTTTCTGATTTTGGGCCGAAAATCACTATTAAAATTGTGGAGAATTTGCGTGAGGATATATTTTCAGGGAAGCTTAAATCAGGGAATGAGATAAAGGAAGCACTGAAGAGAAATGTTTTGGAATTGTTAACCTCCAAGGGGAGTAAAACAGAACTACAACTTGGATTCAGGAAGCCAGCTGTAATAATGATAGTTGGTGTTAATGGTGGAGGGAAGACAACATCTTTGGGAAAGCTGGCCTATAGATTGAAGAATGAAGGGGTTAAGATACTTATGGCAGCTGGTGATACATTTAGAGCAGCCGCTAGTGATCAGTTGGAAATATGGGCTGAAAGGACTGGGTGTGAAATTGTTGTGGCTGAATCAGAGAAAGCGAAAGCATCATCAGTGCTTTCACAGGCTGTAAAAAAGGGAAAAGAGCAAGGTTTTGATATAGTATTATGTGATACATCTGGGCGTTTACACACTAATTACAGCCTAATGGAAGAGTTGATTTCTTGTAAAAAGTCTGTTGCTAAAGTCATTCCAGGTGCACCCAATGAGATCCTACTGGTTCTTGATGGGACTACCGGTTTGAATATGTTGCCACAAGCTAGAGAATTCAATGATGTTGTGGGCATTACTGGTTTGATTTTGACCAAACTGGATGGTTCTGCTAGAGGTGGCTGTGTGGTCAGCGTGGTTGATGAGCTTGGAATCCCTGTAAAATTTGTGGGTGTCGGTGAAGGTGTTGAAGACCTTCAACCCTTTGATGCGAATGCCTTTCAGAAACAGCTTGACATGAATGCAGAGCAGCACCGGGTCGACGGAAAGATTGCACTTTATTATGGAACTAGTTCTTGGGAGAGGCCAAGCATTGCGAATGTGTACAGCATTTTCAGGTGA 1146 0.4503 MATTSASFARFSVISRPSSDSSYVLFNVAPEPEPPIPVLEKAKSDVEKVFSGFSKTRNNLTVIDELLLYWNLAETDRVLDKLEEALLVSDFGPKITIKIVENLREDIFSGKLKSGNEIKEALKRNVLELLTSKGSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRLKNEGVKILMAAGDTFRAAASDQLEIWAERTGCEIVVAESEKAKASSVLSQAVKKGKEQGFDIVLCDTSGRLHTNYSLMEELISCKKSVAKVIPGAPNEILLVLDGTTGLNMLPQAREFNDVVGITGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDANAFQKQLDMNAEQHRVDGKIALYYGTSSWERPSIANVYSIFR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01774 381 SMART SRP54_N_2 49 130 IPR013822 GO:0005525|GO:0006614
Spst4g01774 381 SMART SRP54_3 146 347 IPR000897 GO:0005525|GO:0006614
Spst4g01774 381 FunFam Cell division FtsY, chloroplastic-like protein 37 137 - -
Spst4g01774 381 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 321 334 IPR000897 GO:0005525|GO:0006614
Spst4g01774 381 Gene3D - 38 137 IPR042101 -
Spst4g01774 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 344 IPR027417 -
Spst4g01774 381 Pfam SRP54-type protein, GTPase domain 146 346 IPR000897 GO:0005525|GO:0006614
Spst4g01774 381 FunFam Signal recognition particle receptor FtsY 139 348 - -
Spst4g01774 381 Pfam SRP54-type protein, helical bundle domain 76 124 IPR013822 GO:0005525|GO:0006614
Spst4g01774 381 NCBIfam signal recognition particle-docking protein FtsY 75 346 IPR004390 GO:0006614
Spst4g01774 381 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 46 123 IPR036225 -
Spst4g01774 381 Gene3D - 138 346 IPR027417 -
Spst4g01774 381 SMART AAA_5 145 318 IPR003593 GO:0016887
Spst4g01774 381 PANTHER SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA 39 346 - -
Spst4g01774 381 CDD FtsY 147 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01774 Spst-Chr4 57826705 57833517 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01774 K03110 - gmx:100791073 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01774 4 57826705 57833517 Spst4g01774 4 57826705 57833517 ECH