Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01697 ATGGTGCGTGCAATAGTAAGTGACGTAATGATGTATCTTCTTAGAAGAAGTGCACTGGAGATATTTATGGTGGACCGTTCCAACTTCTTCTTTGACTTCGGGAGTAGAGAAGGGCGAAGAAATGCATATCAAGCAATTGTTCATGCACGACCTCTGTATTTAAACAATATATATTTAGCTACTCAGAGACCTGGACAACTTTTGAAAAGAACCCAACTTATGGAGCGTTGGGCAAGGTGGGAGATTAGTAATTTTGAGTATCTAATGCAACTCAATACATTGGCTGGGCGTAGTTATAACGATATAACCCAGTATCCAGTTTTCCCCTGGATTCTTTCTGATTACAGTTCAGAGAGCTTGGATCTTTCTAATCCTTATTCTTACCGGGATCTTTCAAAGCCTATTGGAGCACTGAACCCAGATCGCCTTAAAAAATTTCAAGAGAGATACTCCAGCTTCGATGACCCAGTCATTCCTAAATTCCACTATGGATCGCACTACTCAAGTGCTGGAACAGTTTTGTATTATCTTGTTAGGGTCGAACCATTCACTACTCTTGCAATCAAACTACAAGGCGGAAAATTTGATCATGCAGATCGAATGTTTTCTGATATTTCTGCTACATGGAATGGAGTTCTTGAGGACATGAGTGATGTGAAGGAATTGGTTCCTGAGCTATTTTACCTCCCGGAGGTCCTCACAAATGAAAATTCAATTGATTTTGGCACAACACAATTGGGAGGAAAGCTCGATACTGTAAAACTTCCTACTTGGGCTGAGAGTCCAGTTGATTTTGTGCATAAGCATAGGATGGCTCTGGAGAGCGAGTATGTATCTGCTAATTTGCATGAGTGGATTGATCTCATATTTGGGTATAAACAACAGGGCAAAGAGGCTATTGCAGCAAATAATGTTTTCTTTTACATTACCTATGAAGGGACAGTGGATATTGATAAAATATTTGACCCAGTGCAACAGCATGCCACACAAGATCAGATTGCTTATTTTGGACAAACACCATCCCAACTTCTTACTATTCCACACTTGAAGAAGAAACCGCTATCAGAAGTTCTGCATTTGCAGACAATATTCCGCAACCCAAAAGCAGTCAAGCCATATGCCGTCCCATCCCCTGAAAACTGCAATCTACCAGCAGCTGCTATCCATGCGTCTTCAGATATGGTTGTGGTTGTTGGTTTGAATGCACCAGCAGCTCATATTGCACAGCACAAGTGGCAACCCAATACACCTGATGGCCAGGGTACACCATTCCTCTTTCACCATGGAAAAGCTACGTCGGGCTCTTCTGGTGGGATTATACGCATGTTAAAAGGTCCTACTGGGACTGGTGAAGAGTGGCAATATCCCCAAGCATTGGCTTTTGCTGTTTCTGGACTTAGAAGCCAGGCTATTGTCTCTATAACATGTGACAAAGAAATTATTACTGGTGGGCATGCTGATAATAGTATTAGGTTAATATCTTCAGATGGAGCTAAAACCTTGGAAACAGCCTATGCACACTGTGCTCCTGTAACTTGCATTGGTCTTTCACCCAATAGTGACTACCTGGTGACAGGTTCCCGAGATACAACAGTATTACTCTGGAGAATACATAGGGCTCTTGCATCGCATTCAAGTGTCATATCAGAATCTTCTACTGGGACTGGCACTGGCACGCCTTCAACCAGCAGTAGTTCTTCATCACATTTGTTGATAGAAAAGAATCGGAGACGCCATATTGAGGGCCCTATACAGGTACTTAGGGGCCACCAGAGTGAAATACTCAGTTGTTGTGTTAACTCAGATCTTCGAATGGTTGTTTCATGCTCCCACTCATCAGATGTTCTCCTGCACTCTATAAGAAAGGGACGTTTAGTCAGAAGGCTGGATGGTGTGGTGGCTCACACCGTCTCCCTTTCTTCTGAAGGGGTTGTTATGGCTTGGAATGAATCAAAGCATATTCTCAGTACCTTTACTCTTAATGGTGTTCTGATTGCAAAAACAGAACTATCTTTCTCTAGCAGCATTAGCTGTATGGAAATTTCTCTTGATGGAAGGAGTGCTTTGATTGGAATTAACTCTCAAGAAAATGGCAGAGCCTACAATAACAGTTGGAATTCGCAATCCAGTAAGTCAAGTAATGAAGATTTTTATTCAGACTCAGAAGAAACTCACGATAGCAACAGAATAAATACTCCATCACCATCAATCTGCTTCTTGGATTTGCACACTTTGGAGGTATTTCATGTGTTGAAGCTGAAAGAAGGACAGAATATCACAGCTCTTGCTCTAAATAAGGATAACACAAATCTTTTGGTTTCAACTTCGGATAAACAATTGATTATCTTTACTGATCCAGCTTTGAGCTTGAAAGTGGTAGATCAAATGCTCAAGCTTGGTTGGGAAGGTGACGGGCTTAAGCACCTCATAAAATGA 2436 0.4167 MVRAIVSDVMMYLLRRSALEIFMVDRSNFFFDFGSREGRRNAYQAIVHARPLYLNNIYLATQRPGQLLKRTQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSESLDLSNPYSYRDLSKPIGALNPDRLKKFQERYSSFDDPVIPKFHYGSHYSSAGTVLYYLVRVEPFTTLAIKLQGGKFDHADRMFSDISATWNGVLEDMSDVKELVPELFYLPEVLTNENSIDFGTTQLGGKLDTVKLPTWAESPVDFVHKHRMALESEYVSANLHEWIDLIFGYKQQGKEAIAANNVFFYITYEGTVDIDKIFDPVQQHATQDQIAYFGQTPSQLLTIPHLKKKPLSEVLHLQTIFRNPKAVKPYAVPSPENCNLPAAAIHASSDMVVVVGLNAPAAHIAQHKWQPNTPDGQGTPFLFHHGKATSGSSGGIIRMLKGPTGTGEEWQYPQALAFAVSGLRSQAIVSITCDKEIITGGHADNSIRLISSDGAKTLETAYAHCAPVTCIGLSPNSDYLVTGSRDTTVLLWRIHRALASHSSVISESSTGTGTGTPSTSSSSSSHLLIEKNRRRHIEGPIQVLRGHQSEILSCCVNSDLRMVVSCSHSSDVLLHSIRKGRLVRRLDGVVAHTVSLSSEGVVMAWNESKHILSTFTLNGVLIAKTELSFSSSISCMEISLDGRSALIGINSQENGRAYNNSWNSQSSKSSNEDFYSDSEETHDSNRINTPSPSICFLDLHTLEVFHVLKLKEGQNITALALNKDNTNLLVSTSDKQLIIFTDPALSLKVVDQMLKLGWEGDGLKHLIK 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01697 811 MobiDBLite consensus disorder prediction 701 715 - -
Spst4g01697 811 Pfam PH domain associated with Beige/BEACH 10 47 IPR023362 -
Spst4g01697 811 Pfam Neurobeachin beta propeller domain 469 685 IPR046851 -
Spst4g01697 811 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 504 537 - -
Spst4g01697 811 FunFam neurobeachin isoform X1 64 351 - -
Spst4g01697 811 SUPERFAMILY BEACH domain 59 351 IPR036372 -
Spst4g01697 811 PANTHER BEIGE/BEACH-RELATED 12 786 - -
Spst4g01697 811 MobiDBLite consensus disorder prediction 701 729 - -
Spst4g01697 811 MobiDBLite consensus disorder prediction 548 570 - -
Spst4g01697 811 SUPERFAMILY WD40 repeat-like 476 784 IPR036322 GO:0005515
Spst4g01697 811 SMART WD40_4 744 784 IPR001680 GO:0005515
Spst4g01697 811 SMART WD40_4 580 619 IPR001680 GO:0005515
Spst4g01697 811 SMART WD40_4 497 536 IPR001680 GO:0005515
Spst4g01697 811 ProSiteProfiles Trp-Asp (WD) repeats profile. 504 545 IPR001680 GO:0005515
Spst4g01697 811 SUPERFAMILY PH domain-like 10 50 - -
Spst4g01697 811 Gene3D BEACH domain 63 351 IPR036372 -
Spst4g01697 811 Gene3D - 580 793 IPR015943 GO:0005515
Spst4g01697 811 ProSiteProfiles BEACH-type PH domain profile. 1 47 IPR023362 -
Spst4g01697 811 SMART Beach_2 74 351 IPR000409 -
Spst4g01697 811 CDD Beach 74 351 IPR000409 -
Spst4g01697 811 Gene3D - 416 579 IPR015943 GO:0005515
Spst4g01697 811 ProSiteProfiles BEACH domain profile. 62 351 IPR000409 -
Spst4g01697 811 Pfam Beige/BEACH domain 75 350 IPR000409 -
Spst4g01697 811 Gene3D - 2 46 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01697 Spst-Chr4 56773721 56789792 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01697 - - pvu:PHAVU_010G048900g 1456.81