Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01684 ATGTTGTTGCAACCCTTCACTACTTGCTTCACCTTTCTTCGTAGGATGACCAAATCCTTCCTCAACAAACCACCAAGAATCGTAAAGGGCATGATGAGGGCATGCTATAAAGGAAAACGACCCAGGAGAAAATTCTCTTCAGGTTCTGGCTTGTCAACCTCTTCTTTCCTTCACATGGAGCTGTCCACTCAGTTTCATCAAGTTTTCAAGCTGATTGACTCTAATGGGGATGGGAAGATCTCAGCCAATGAGCTGAGTGAGGTGCTTGCATGCCTTGGATACAACAAGAGCAGTGCTGCTAAGGAAGCTGAAGGCATGGTGAGAGTGTTGGACTTCAATGGAGATGGGTTTGTGGACTTGGATGAGTTCATGGTTGTCATGGAAGAAGAAGATGAAGAGGAAGAAGAGAAGATTGGAAGTGGCACGAGGCATGATGATGGTTACCTGATGGATGCTTTTCTTGTCTTCGACACTGACAAAAATGGCCTCATTTCAGCCAAGGAACTGCAGAGAGTTCTCATCAATCTAGGGTGCGAAAACTGTAGCCTCAGAGAGTGCAAACGTATGATCAAAGGGGTTGATAAGAATGGAGATGGGGCTGTGGATTTTCAAGAATTTCGATCCATGATGCAAACTGGACTTGCAAATTAG 651 0.4501 MLLQPFTTCFTFLRRMTKSFLNKPPRIVKGMMRACYKGKRPRRKFSSGSGLSTSSFLHMELSTQFHQVFKLIDSNGDGKISANELSEVLACLGYNKSSAAKEAEGMVRVLDFNGDGFVDLDEFMVVMEEEDEEEEEKIGSGTRHDDGYLMDAFLVFDTDKNGLISAKELQRVLINLGCENCSLRECKRMIKGVDKNGDGAVDFQEFRSMMQTGLAN 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01684 216 SUPERFAMILY EF-hand 63 211 IPR011992 -
Spst4g01684 216 Gene3D - 51 139 - -
Spst4g01684 216 Gene3D - 140 215 - -
Spst4g01684 216 FunFam calmodulin-like protein 3 142 214 - -
Spst4g01684 216 ProSitePatterns EF-hand calcium-binding domain. 73 85 IPR018247 -
Spst4g01684 216 ProSiteProfiles EF-hand calcium-binding domain profile. 144 179 IPR002048 GO:0005509
Spst4g01684 216 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 149 211 - -
Spst4g01684 216 CDD EFh 148 211 IPR002048 GO:0005509
Spst4g01684 216 ProSiteProfiles EF-hand calcium-binding domain profile. 98 133 IPR002048 GO:0005509
Spst4g01684 216 ProSiteProfiles EF-hand calcium-binding domain profile. 60 95 IPR002048 GO:0005509
Spst4g01684 216 CDD EFh 64 127 IPR002048 GO:0005509
Spst4g01684 216 ProSitePatterns EF-hand calcium-binding domain. 194 206 IPR018247 -
Spst4g01684 216 ProSiteProfiles EF-hand calcium-binding domain profile. 181 216 IPR002048 GO:0005509
Spst4g01684 216 SMART efh_1 64 92 IPR002048 GO:0005509
Spst4g01684 216 SMART efh_1 102 130 IPR002048 GO:0005509
Spst4g01684 216 SMART efh_1 185 213 IPR002048 GO:0005509
Spst4g01684 216 SMART efh_1 148 176 IPR002048 GO:0005509
Spst4g01684 216 ProSitePatterns EF-hand calcium-binding domain. 157 169 IPR018247 -
Spst4g01684 216 ProSitePatterns EF-hand calcium-binding domain. 111 123 IPR018247 -
Spst4g01684 216 Pfam EF-hand domain pair 149 211 IPR002048 GO:0005509
Spst4g01684 216 Pfam EF-hand domain pair 64 127 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01684 Spst-Chr4 56565442 56566092 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01684 65 210 EF-hand Containing Proteins AT1G66400 43.836 5.04e-33 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01684 - - gmx:100799475 319.701