Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01668 GAACATGGAAAAATTAAATCAAATAAGAAACAGAAATTGAGCAAAACTCAGAAGAAGAAGAAGAAGAAGTTTGAGGATGACGAGAAGAAACAACTTCTTCTGGAAAAAGCTATTCAGAAATTCAATGAGAACACACTTCCAGAGTATGCATATCCTCTTTTGCTGTCTTCATGCAAAATAAACCGGGATGAGACTACGAAGGAAAAGCGTAGGAGGGCTGTTCATTTATTGAAAGAAGGATTGGAGGTTTCATATGATGGGCTGTCCAAGAAACCTCAGATGGATGAAATTCATTTAGCACAAGCTGATGAAGTTGAAGAAAATGACATTCAAATTCAACCCATTAGATCAGTAGAAGTCTTAAATACAACGTCAGTGCCTTTGGAGTCCTCTGAAGAACCACTTCATTGCAATGAAGTGGAAAACTACAAATATGTTTCTGAGAATCTTGCTGACATTTCAATTGTCAAGAAACATGATGAAATCAGAAGTTTTCCCTTGTCTTGTTCGGTTGATGAAATAAAAAAGACCAATTTAAAGGATAGAACAGATGAGAACCACAACTCCAATGAATTGAGCAACCTTCCTGATTATTCTGCACCAAGACCTTCAAATGTTCCTACTGTTGTTCATGTGTGTAGACCAAGTGAAGTTGAAGACAAAAGAAAGGATTTGCCTATAGTTATGATGGAGCAAGAGATAATGGAAGCTATAAATGATTCCTCTAGTGTTATCATATGTGGAGAAACTGGATGTGGTAAAACAACTCAAGTTCCTCAGTTTCTTTATGAAGCCGGTTATGGTTCAAGTAAGGGTATCATTGGTGTTACTCAACCACGTAGAGTGGCTGTTCTTGCCACAGCTAAGCGTGTGGCATATGAGCTTGGTCTCCATCTGGGGAAGGAAGTTGGTTTTCAAGTCAGATATGACAAGAAGATTGGTGAAAATTGTTCTATCAAGTTTATGACTGATGGAATTTTGCTACGAGAAGTTCAGAATGATATTTTGTTGAGACGCTATTCTGTCATAATTCTTGATGAGGCGCATGAGAGGAGCTTGAACACTGACATTTTGATTGGGATGCTCTCACGTGGAATTCAAACTCGCCAAATGATTTATAACAAACAACAGAAAATGATACTTTCAGGGGAAATTATAAGTCCTGAAAAAATGATTTTTCCATTAAGACTTGTGCTTATGAGTGCCACCTTGCGTGTACAAGACTTCACTTCTGGAAAGTTATTCCATACTTCTCCACCTGTGATAGAAGTTCCTACAAGGCAATTTCCAGTATCTGCATACTTCTCAAAGAAAACAGAGAAAACAGATTATATTGGCGAAGCATATAAGAAAGTCTTGGCAATTCACAAGAGGTTGCCACCTGGGGGCATACTTGTTTTTGTTACTGGGCAAAGGGAAGTAGAGGACTTGTGCAGGAAATTACGGAAAGCATCAAGGGAGTTTATCAAGAAAAAAGTTGAAGGGTGTGTGGAAACTGATAGAACTGTGGTCAATGAAACAAACTCTGTTGAGGGAGTAAATATTAACGAGATCAATGAAGCATTTGAGGTTCATGGAAGTTCATCCATCCAGCAAACTGATAGATTTAGTGGTTATGATGAAGATGAGGATAATGCAAATGAGAATGAATCTGATTTTTCTTATGACTCTGAAACAGAGAGTGAACTGGAATTTGATGATGATAATCTTGAGCTTTCAGAGAACAATAATGAAATTGTGGATGTCTTAGGACAGCCAGGTAGTCTTGCTTCACTAAAGGCTGCTTTTGAAAAATTGTCTGGGAAGGCCACATTAAGTTCCTCAAATGAAGAGAAGACAGTTTCTCTGAATTTAGAAGGTAATTTAGACCAATCAATAGTTCTCAGGGGGAAAAGAACAAAAGAAAGTTGCAGTCCTCCAGGTGCACTCTGTGTTCTACCTCTGTATGCCATGCTTCCTGCAGCAGCTCAACTTCGTGTATTTGAAGCGGTTGGGGAGGGAGAGCGGCTTGTAGTTGTTGCCACAAATGTTGCCGAAACATCTTTAACCATCCCAGGGATAAAATATGTGGTTGATACTGGAAGAGAAAAGGTGAAGAATTATGACCCCTCTAATGGTATGGAGACATATGAAATACAATGGATAAGTAAGGCATCTGCTGCACAGCGTGCAGGCAGATCTGGAAGAACTGGACCTGGACACTGTTACCGTCTCTATTCTTCTGCAGCCTTTAATAATGAATTTCCTGAGCACTCTCCTGCGGAAGTTGAGAAAGTACCTGTTCATGGTGTTGTACTTCTCTTGAAATCCATGCATATTAAAAAGGTTGCAAACTTTCCATTTCCCACTTCTCTTAAAGCTGCTTCTTTGATTGAAGCTGAAAATTGCTTGAAATCTCTTGAAGCACTTGATAGCAAGGATGAACTTACACTTTTGGGAAAAGCCATGGCACATTATCCCTTGAGTCCTCGTCATTCTAGAATGCTCCTCACTGTTATTAAAAGTACAAGACATGAGCTTAAATGTAATTCAAATATGCTTTTGGCATATGCTGTTGCAGCTGCTGCGGCGTTGAGCTTGTCAAATCCTTTTGTAATGCAATATGAAGATGGTAGCAGCAGAGATTCAGAGATGTCTGAGAAATCTACAATGGGAGATGCTGAGAAAGACTTTGATAAAAAAGGAAAGTCAAGCAGAAAGAAACTTAAAGAATCCTCCAAAGTTGCACGCGGAAAATTTCGAGTTGTCACTAGTGATGCCCTCAGCATAGCTTATGCATTACAGTGTTTTGAACATTCACGGAAATCAGTAGAATTCTGTGATGACAATGCATTGCATTTCAAAACCATGGATGAAATGTCCAAACTTCGACAACAACTACTTAAACTGGTCTTTTATCAGAGTGATAATGGTGGTCTCGAAGAAGAGTACTCATGGACCCATGGAACATTAGAGGATGTAGAACGTGCTTGGCAGGTTTCTTCTGAAAAGTACCCACTTTCTCTTGTTGAGGAAAGGCTCATCTGTCAAGCAATATGTGCTGGCTGGGCAGATAGGGTTGCTAAACGTATTACATCTTCTTCTAGGGCCTTTGAAGGAGAGAAAACATCTCGAGTCTTAAGGTATCAATCATGCATGGTTGATGAAAGTGTTTTACTTCATCGTTGGTCTACAGTTTCCATTGTAGGCCCTGAGTATTTAGTTTACAATGAACTATTAGAGACCAGAAGACCAAATAAAGAAGGGATAACAAGTACCAAGAGAGCATATATGCATGGAGTAACAAGCGTAGAGCCAGCTTGGCTTGTTGAGCATGCAAAGTCTTCATGCGTCTTTTCTTCCCCCCTGATGGATCCTAGACCTTTTTATGATGCTCAGACTGACCAAGTAAAATGTTGGGTAACCCCATCCTTTGGGCGTTTCTGTTGGGAGCTTCCAAAGCATTCATTGCCCATTAGCAATGATGAACATCGGGTGCAAGTGTTTGCCTATGCTTTGCTTGAAGGCCAGGTGTGTCCCTGTTTAAAATCTGTTCGAAAATACATGTCAGCTCCCCCTGAAAGTATCTTGAAGAGAGAAGCATTTGGTCAGAAAAGGGTGGGAAATCTTTTAAGCAAGTTAAAGAGCAGGCTGATTGATAGCTCTGCCGTGCTAAGAATGGTGTGGAAGGAGAATCCAAGGGAACTATTTTCAGAAATTTTGGATTGGTTTCAGCAGAGTTTTCACAAGCACTTTGAAGAGTTATGGTTACAAATGCTTAACGAACTGCTTGTGAAGACACAAGAACACCCTCAGCATAGAAGTTCCAGAAAAAAGAAAGAAAAATCGAAATCACTCTGTTAA 3843 0.3968 EHGKIKSNKKQKLSKTQKKKKKKFEDDEKKQLLLEKAIQKFNENTLPEYAYPLLLSSCKINRDETTKEKRRRAVHLLKEGLEVSYDGLSKKPQMDEIHLAQADEVEENDIQIQPIRSVEVLNTTSVPLESSEEPLHCNEVENYKYVSENLADISIVKKHDEIRSFPLSCSVDEIKKTNLKDRTDENHNSNELSNLPDYSAPRPSNVPTVVHVCRPSEVEDKRKDLPIVMMEQEIMEAINDSSSVIICGETGCGKTTQVPQFLYEAGYGSSKGIIGVTQPRRVAVLATAKRVAYELGLHLGKEVGFQVRYDKKIGENCSIKFMTDGILLREVQNDILLRRYSVIILDEAHERSLNTDILIGMLSRGIQTRQMIYNKQQKMILSGEIISPEKMIFPLRLVLMSATLRVQDFTSGKLFHTSPPVIEVPTRQFPVSAYFSKKTEKTDYIGEAYKKVLAIHKRLPPGGILVFVTGQREVEDLCRKLRKASREFIKKKVEGCVETDRTVVNETNSVEGVNINEINEAFEVHGSSSIQQTDRFSGYDEDEDNANENESDFSYDSETESELEFDDDNLELSENNNEIVDVLGQPGSLASLKAAFEKLSGKATLSSSNEEKTVSLNLEGNLDQSIVLRGKRTKESCSPPGALCVLPLYAMLPAAAQLRVFEAVGEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDPSNGMETYEIQWISKASAAQRAGRSGRTGPGHCYRLYSSAAFNNEFPEHSPAEVEKVPVHGVVLLLKSMHIKKVANFPFPTSLKAASLIEAENCLKSLEALDSKDELTLLGKAMAHYPLSPRHSRMLLTVIKSTRHELKCNSNMLLAYAVAAAAALSLSNPFVMQYEDGSSRDSEMSEKSTMGDAEKDFDKKGKSSRKKLKESSKVARGKFRVVTSDALSIAYALQCFEHSRKSVEFCDDNALHFKTMDEMSKLRQQLLKLVFYQSDNGGLEEEYSWTHGTLEDVERAWQVSSEKYPLSLVEERLICQAICAGWADRVAKRITSSSRAFEGEKTSRVLRYQSCMVDESVLLHRWSTVSIVGPEYLVYNELLETRRPNKEGITSTKRAYMHGVTSVEPAWLVEHAKSSCVFSSPLMDPRPFYDAQTDQVKCWVTPSFGRFCWELPKHSLPISNDEHRVQVFAYALLEGQVCPCLKSVRKYMSAPPESILKREAFGQKRVGNLLSKLKSRLIDSSAVLRMVWKENPRELFSEILDWFQQSFHKHFEELWLQMLNELLVKTQEHPQHRSSRKKKEKSKSLC 1280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01668 1280 Gene3D - 782 894 - -
Spst4g01668 1280 FunFam ATP-dependent RNA helicase DHX37/DHR1 180 427 - -
Spst4g01668 1280 MobiDBLite consensus disorder prediction 527 558 - -
Spst4g01668 1280 MobiDBLite consensus disorder prediction 1 19 - -
Spst4g01668 1280 MobiDBLite consensus disorder prediction 1265 1280 - -
Spst4g01668 1280 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 591 772 IPR001650 -
Spst4g01668 1280 Pfam DEAD/DEAH box helicase 232 408 IPR011545 GO:0003676|GO:0005524
Spst4g01668 1280 FunFam ATP-dependent RNA helicase DEAH13 778 908 - -
Spst4g01668 1280 MobiDBLite consensus disorder prediction 180 201 - -
Spst4g01668 1280 Gene3D - 171 427 IPR027417 -
Spst4g01668 1280 CDD DEXHc_DHX37 225 424 - -
Spst4g01668 1280 MobiDBLite consensus disorder prediction 873 903 - -
Spst4g01668 1280 MobiDBLite consensus disorder prediction 1261 1280 - -
Spst4g01668 1280 Gene3D - 428 536 IPR027417 -
Spst4g01668 1280 Gene3D - 601 752 IPR027417 -
Spst4g01668 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 834 IPR027417 -
Spst4g01668 1280 Pfam Helicase conserved C-terminal domain 642 731 IPR001650 -
Spst4g01668 1280 PANTHER ATP-DEPENDENT RNA HELICASE 149 1111 - -
Spst4g01668 1280 SMART ha2_5 792 924 IPR007502 GO:0004386
Spst4g01668 1280 MobiDBLite consensus disorder prediction 871 903 - -
Spst4g01668 1280 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 341 350 IPR002464 -
Spst4g01668 1280 MobiDBLite consensus disorder prediction 1 26 - -
Spst4g01668 1280 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1008 1107 IPR011709 -
Spst4g01668 1280 Pfam Helicase associated domain (HA2) 793 922 IPR007502 GO:0004386
Spst4g01668 1280 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 235 422 IPR014001 -
Spst4g01668 1280 CDD SF2_C_RHA 638 739 - -
Spst4g01668 1280 SMART helicmild6 631 731 IPR001650 -
Spst4g01668 1280 SMART ultradead3 223 434 IPR014001 -
Spst4g01668 1280 MobiDBLite consensus disorder prediction 543 558 - -
Spst4g01668 1280 FunFam ATP-dependent RNA helicase DEAH13 428 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01668 Spst-Chr4 56406391 56412024 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01668 K14780 - gmx:100788201 2138.61