Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01606 ATGGATGAAATGCCAAAAAAGGGTTCAAGTAGTGTGCCCAAATGGCACTCTTCTTCAGTCACAACCAGAATTGTGAATAACTTAAATCCTATATGCCAAGCTACCCAACAATTAACTCTCAAGGGGAAGTTCGTGATCATACACAACCAAAGCAAATCAATACCTGGAAAATTAATTTCTGTTCAGATTTATAGTGGGACTGATGTTGATCCTGAGACTGGTAAAGGGAAATTGAGTGAGAAAGCATATTTCAAACAAGTATTCAACATGTTACTAAAAAAGGTGGCTAGACAGTTGGTGGAAGTTGTAAGGCACAAAGCAGGGTATGGAGTTGAGGAAGAGACTGAACAAGACGAAAACAGAAGAACAAGAGAAAATAGTGTGGAGGTGTTTCATCAGACACCAAGAGCATTAGTGGAACTAAGAAAGGAAGAGCTTGATAGATTGAGGGGTAATGGAATGGGAGAAAGAAAGGAATGGGATAGAATCTATGACTATGACTGCTATAATGATCTTGGTGATGCTGACAAAGGTCCTGAGCACCATAGACCAGTTCTTGGTGGCTCAAGGTTGTTTCCATATCCTCGTAGAGGAAGAACAGGTCGAAAACATAGTGCAGAAGGTCCATCAAGTGAGAGCCGGCCACAACCAATGAACTTTAGCATATATGTTCCATCAGATGAGAGATTTGGCCCCACTAAATTGAAGGAGTTGAAATCAAACTGTGTCAATGCTATGGTACATTTTTTACCACCAAAGGCAGAATTTTTACCACGGCGAAAGTCTGCAAACTTTCAATCATTCCAAGAGTTACTTGACATGTTTTCTAGCAATAGGAGCCAAAGAATGGAGGGATGGATGAGAGACTACTTAAAGAAACTGATACCTCTTGATTACATAAAGGAAATAACTATTCCAAACAAGGAACTACCTATCCCTCAAATCATATCCGACATTCCCACCTCAGAACAAATTCGGAATACAGAGTTCAATACAACAATCAATCATAGAACAGAAGCTAGAAGGATGGACACTTTCTCAGGCAAAATAAATGCAAATGGGGTATGTGCTTATGCATCAAGGACTCTTCTATTTTTAAGGAGTGATGGCATGCTTAAGCCATTGACGATAGAACTTAGCTTGCCAGGCCCATCTCCCCACCTTGAAATCCATAGAGTTTTTCTTCCAGCCAAGCAGGGAACACAAGCAGCACTTTGGCAGCTTGCTAAAACTCATGTTTTAGCTAATGATGCTGTTTATCATCAACTAATTAGCCATTGGTTATGCACCCATGCAGTTGTTGAACCATTTATCATTGCCACCAAAAGAAGGCTAAGTGTTATGCATCCAATCCATAGGTTGTTGAATCCTCATTTCAAAGATACCATGCACATAAATGCCCTGGCAAGACTCATCCTTATAAACTCAGGAGGAATTCTGGAGAGAATATTGTTTCCAGGTGAAATCTGTATGCAGATCTCTTGTGATCTCTATAAAGAGTGGAGATTCAATGAACAAGGACTCCCTGCTGATCTACTCAAAAGGGGCATGGCTGTAAAAGATCCAGACATGAAAAACCCCACAGGGATTCAACTTCTGTTGCTGGACTATCCCTATGCCACTGATGGACTTGAAATATGGGTAGCAATCAAAGAATGGGTCCAAGACTTTTGCTCATTCTTCTATAAAGACAATGAGGCCATTGAGGGTGATGTTGAACTCCAATCCTGGTGGTCAGAGATTAGAACTCAAGGCCATGGTGACAAACACAATGACACATGGTGGGACCAAATGACATCACTCTCAAACCTTGTGGAGGCACTAACAACCCTCATATGGATTGCTTCTGCCAAACATGCATCTATAAACTACGGCCAATACGCATACAGTGCCTACCCTCCAAACCGCCCCACACTATGCAGGAAATTTGTTCCTCTAGAAGGGACAGTGGAGTTTGGTGAGTTCCTCAAGGACCCAGATAAGTTTTTTCTCAAGATGCTTCCTAATAGGTTTGAGATGAGTCTTGCAGTGGCATTGGTGGATATTCTCTCAAGGCACACTTGTGATGAGGTCTACTTGGGGTGCCAGCAATCACCAGGGTGGATAGACAATGAAGTGATTCAAAATAGGTTTGCTGATTTCAAACAAGAACTAAAGGAGATTCAATCAAGGATCATGCAAAGGAATAGGGATCCTAAGCTAAAAAATAGGCGTGGCCCTGGAAACATTGAGTACACTCTTTTGTTCCCTGATGCAGCTAGTTCTTCTGCCTCAACAAGTGGAATCTCAGGAAGGGGAATACCTAATAGCATATCAATTTGA 2322 0.4147 MDEMPKKGSSSVPKWHSSSVTTRIVNNLNPICQATQQLTLKGKFVIIHNQSKSIPGKLISVQIYSGTDVDPETGKGKLSEKAYFKQVFNMLLKKVARQLVEVVRHKAGYGVEEETEQDENRRTRENSVEVFHQTPRALVELRKEELDRLRGNGMGERKEWDRIYDYDCYNDLGDADKGPEHHRPVLGGSRLFPYPRRGRTGRKHSAEGPSSESRPQPMNFSIYVPSDERFGPTKLKELKSNCVNAMVHFLPPKAEFLPRRKSANFQSFQELLDMFSSNRSQRMEGWMRDYLKKLIPLDYIKEITIPNKELPIPQIISDIPTSEQIRNTEFNTTINHRTEARRMDTFSGKINANGVCAYASRTLLFLRSDGMLKPLTIELSLPGPSPHLEIHRVFLPAKQGTQAALWQLAKTHVLANDAVYHQLISHWLCTHAVVEPFIIATKRRLSVMHPIHRLLNPHFKDTMHINALARLILINSGGILERILFPGEICMQISCDLYKEWRFNEQGLPADLLKRGMAVKDPDMKNPTGIQLLLLDYPYATDGLEIWVAIKEWVQDFCSFFYKDNEAIEGDVELQSWWSEIRTQGHGDKHNDTWWDQMTSLSNLVEALTTLIWIASAKHASINYGQYAYSAYPPNRPTLCRKFVPLEGTVEFGEFLKDPDKFFLKMLPNRFEMSLAVALVDILSRHTCDEVYLGCQQSPGWIDNEVIQNRFADFKQELKEIQSRIMQRNRDPKLKNRRGPGNIEYTLLFPDAASSSASTSGISGRGIPNSISI 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01606 773 Gene3D - 130 232 - -
Spst4g01606 773 PRINTS Plant lipoxygenase signature 262 283 IPR001246 GO:0016491
Spst4g01606 773 PRINTS Plant lipoxygenase signature 121 142 IPR001246 GO:0016491
Spst4g01606 773 PRINTS Plant lipoxygenase signature 680 694 IPR001246 GO:0016491
Spst4g01606 773 PRINTS Plant lipoxygenase signature 160 176 IPR001246 GO:0016491
Spst4g01606 773 PRINTS Plant lipoxygenase signature 193 212 IPR001246 GO:0016491
Spst4g01606 773 Coils Coil 704 724 - -
Spst4g01606 773 ProSitePatterns Lipoxygenases iron-binding region signature 2. 448 458 IPR020834 GO:0016702|GO:0046872
Spst4g01606 773 ProSitePatterns Lipoxygenases iron-binding region signature 1. 421 435 IPR020833 GO:0016702|GO:0046872
Spst4g01606 773 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 128 773 IPR013819 GO:0016702|GO:0046872
Spst4g01606 773 Pfam Lipoxygenase 138 330 IPR013819 GO:0016702|GO:0046872
Spst4g01606 773 Pfam Lipoxygenase 348 750 IPR013819 GO:0016702|GO:0046872
Spst4g01606 773 PRINTS Lipoxygenase signature 403 420 IPR013819 GO:0016702|GO:0046872
Spst4g01606 773 PRINTS Lipoxygenase signature 421 438 IPR013819 GO:0016702|GO:0046872
Spst4g01606 773 PRINTS Lipoxygenase signature 441 461 IPR013819 GO:0016702|GO:0046872
Spst4g01606 773 PANTHER LIPOXYGENASE 347 773 IPR000907 GO:0016702|GO:0034440|GO:0046872
Spst4g01606 773 MobiDBLite consensus disorder prediction 754 773 - -
Spst4g01606 773 Gene3D - 234 319 IPR027433 -
Spst4g01606 773 Gene3D - 418 771 - -
Spst4g01606 773 SUPERFAMILY Lipoxigenase 133 773 IPR036226 -
Spst4g01606 773 Gene3D - 338 417 - -
Spst4g01606 773 MobiDBLite consensus disorder prediction 179 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01606 Spst-Chr4 55414796 55422196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01606 126 773 Acyl Lipid Metabolism Gene Families AT1G55020 44.023 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01606 K00454 - gmx:100797946 1235.71