Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01599 ATGTCTGGTCACTGGGGGATTCTTGTTTCAGATCCATGGCTTCAGAATCAGTTTACACAAGTGGAACTTCGCAGCTTAAAATCCCACTTCATGAGCATGAGGAGGGAGAGTGGGAGGCTCGTGATTGCGGATTTGGCTTCCAAGATGTCAAGGCTGAAGGTGGTGGGAGAGAATCTGAGTGAGGAAGAGAGAGCTTCTTGTGTGAAGGATTTGTATCAAAACACCGAGGAGGAGGTTGAATTTGAATTGTTTCTTAAGGTATACTTGAAACTCCAAACTTTTGCAAATTCTAGAACTGGAAGTAGTCCAAAGAACTCCTCAGCATTCCTCAAGGCAGCTACAACCACATTGCTTCACACAATAAGTGAATCTGAGAAAGCATCATATGTAGCACACATAAATCACTATCTTGCAAAGGATGAGTTCCTTAAGAAGTATCTTCCTATTGACCCTTCAACCAATGAGCTCTTTGAAATTGCAAAAGATGGTGTTCTTCTTTGCAAGCTTATCAATGTGGCAGTTCCAGGGACCATTGATGAACGAGCGATCAATACAAAAAGAATACTCAATCCATGGGAAAGGAATGAAAATCACACACTTTGCCTCAACTCTGCTAAAGCAATTGGATGTACAGTGGTCAACATTGGCACTCAGGACTTCATTGAAGGAAGGCGTCATCTGGTGCTTGGGGTGATTTCTCAGATTATTAAGATACAATTATTGGCGGACCTTGATCTGAAGAAAACTCCTCAGCTTCTTGAGTTGCTTGATGATAGTAAGGATATGGAAGAGTTAATGAATCTACCACCAGAGAAGATCTTGTTAAGGTGGATGAATTTCCATTTGAAGAAAGCAGGGTACAAGAAGATTGTGACTAACTTCTCCTCTGATGTGAAGGATGCTGAGGCTTATGCACACCTTCTAAATGTTCTTGCACCTGAATACACCAATCCCTCCACATTGGCAATTAAAAATCCCTTTGAAAGAGCAAAGTTAGTTCTAGAACATGCTGATAAGATGGGATGCAAAAGATACTTAACTGCAAGAGACATTGTGGAAGGATCTCCAAATCTTAATCTTGCCTTTGTTGCACATATTTTCCAGCACAGGAATGGACTTTCAGCTCAGACAAAACAACAGATGTCTCTCCTTGAAACATTTCCAGATGATACTCAAGACTCTAGAGAAGAAAGAGCTTTTCGCCTTTGGATGAATAGCTTTGGAAATTCAGCATATATTAACAATGTCTTTGAGGATCTCCGAAACGGATGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTTAATTGGAAGATTGCCAACAAGCCTCCAATTAAGATGCCATTTAGAAAAGTAGAGAACTGCAATCAAGTTGTGAAAATAGGGAAACAGCTTAAATTTTCACTAGTAAATGTTGCTGGAAACGACATTGTGCAGGGAAATAAAAAGTTAATACTAGCTTATTTGTGGCAATTGATGCGATACAACATCCTACAACTTCTGAAGAACTTGAGATTTCATTCTCGTGGAAAAGAGATAACTGATGCTGATATTTTAGAATGGGCCAACAGCAAGGTTAGCAGCTCTGGAAGCCAAAGCAGAATGGACAGTTTTAAGGATAAAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTGCAGCCCAGAGCTGTAAATTGGGGTCTTGTAACAAAGGGAGTAACTGACCAAGAGAAAAAGATGAATGCCACTTACATTATCAGTATTGCAAGAAAGCTTGGATGTTCTATATTTCTGCTTCCTGAAGATATCACTGAGGTGAATCAAAAAATGATCCTGACACTAACAGCTAGTATAATGTCTTGGTGCCTGAAGCACCCTCATGAAGAAAGAACAGTGGGAACGTCAGATAATGAGAGTGTGAGTCAGTTGGAGACCACATCAAATTCAACACTAGATGACTCTGCCTCTGATTCATCAGTAGATGAGAGTGGGAACATGTAA 2001 0.4023 MSGHWGILVSDPWLQNQFTQVELRSLKSHFMSMRRESGRLVIADLASKMSRLKVVGENLSEEERASCVKDLYQNTEEEVEFELFLKVYLKLQTFANSRTGSSPKNSSAFLKAATTTLLHTISESEKASYVAHINHYLAKDEFLKKYLPIDPSTNELFEIAKDGVLLCKLINVAVPGTIDERAINTKRILNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLDLKKTPQLLELLDDSKDMEELMNLPPEKILLRWMNFHLKKAGYKKIVTNFSSDVKDAEAYAHLLNVLAPEYTNPSTLAIKNPFERAKLVLEHADKMGCKRYLTARDIVEGSPNLNLAFVAHIFQHRNGLSAQTKQQMSLLETFPDDTQDSREERAFRLWMNSFGNSAYINNVFEDLRNGWVLLETLDKVSPGIVNWKIANKPPIKMPFRKVENCNQVVKIGKQLKFSLVNVAGNDIVQGNKKLILAYLWQLMRYNILQLLKNLRFHSRGKEITDADILEWANSKVSSSGSQSRMDSFKDKSLSDGIFFLELLSSVQPRAVNWGLVTKGVTDQEKKMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMSWCLKHPHEERTVGTSDNESVSQLETTSNSTLDDSASDSSVDESGNM 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01599 666 CDD CH_AtFIM_like_rpt3 392 505 - -
Spst4g01599 666 ProSiteProfiles Calponin homology (CH) domain profile. 123 240 IPR001715 GO:0005515
Spst4g01599 666 SMART ch_5 125 238 IPR001715 GO:0005515
Spst4g01599 666 SMART ch_5 396 498 IPR001715 GO:0005515
Spst4g01599 666 SMART ch_5 517 621 IPR001715 GO:0005515
Spst4g01599 666 SMART ch_5 270 369 IPR001715 GO:0005515
Spst4g01599 666 FunFam Fimbrin-2 isoform A 246 374 - -
Spst4g01599 666 FunFam Fimbrin-2 like 119 245 - -
Spst4g01599 666 Gene3D - 246 374 IPR036872 -
Spst4g01599 666 ProSiteProfiles Calponin homology (CH) domain profile. 515 623 IPR001715 GO:0005515
Spst4g01599 666 ProSiteProfiles Calponin homology (CH) domain profile. 268 371 IPR001715 GO:0005515
Spst4g01599 666 PANTHER FIMBRIN/PLASTIN 4 625 IPR039959 GO:0051015|GO:0051017
Spst4g01599 666 CDD CH_AtFIM_like_rpt1 124 239 - -
Spst4g01599 666 Gene3D - 508 620 IPR036872 -
Spst4g01599 666 MobiDBLite consensus disorder prediction 629 666 - -
Spst4g01599 666 MobiDBLite consensus disorder prediction 635 666 - -
Spst4g01599 666 CDD CH_AtFIM_like_rpt2 260 368 - -
Spst4g01599 666 FunFam Fimbrin-2 like 390 507 - -
Spst4g01599 666 Pfam Calponin homology (CH) domain 151 237 IPR001715 GO:0005515
Spst4g01599 666 Pfam Calponin homology (CH) domain 518 622 IPR001715 GO:0005515
Spst4g01599 666 Pfam Calponin homology (CH) domain 396 499 IPR001715 GO:0005515
Spst4g01599 666 Pfam Calponin homology (CH) domain 269 370 IPR001715 GO:0005515
Spst4g01599 666 ProSiteProfiles Calponin homology (CH) domain profile. 394 500 IPR001715 GO:0005515
Spst4g01599 666 SUPERFAMILY Calponin-homology domain, CH-domain 121 619 IPR036872 -
Spst4g01599 666 Gene3D - 119 245 IPR036872 -
Spst4g01599 666 Gene3D - 390 507 IPR036872 -
Spst4g01599 666 FunFam Fimbrin-1 isoform A 508 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01599 Spst-Chr4 55352244 55358887 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01599 1 625 EF-hand Containing Proteins AT5G55400 65.710 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01599 - K17275 gmx:100799696 1268.45