Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01541 ATGGCCATGCCACTGATTCCTCTGTTCATCTTCTTTTTCTCATTCTCCATATCCAGAGGTGAAAGATCAGGGGGAGTAGGGGTGAACTACGGCCAATTGGGGAACAACCTTCCACCGCCCAGAATCTCAGTGCGTCTGATACAGTCGCTGAAGGCGAAGAGCGTGAAAATATACGACGCAAACGCGGAAATTCTAGAAGCGCTTCGGAACACGGGGATTCAGGTGTCGATTATGCTACCGAACGAGCTCGTAGTGAACACGTCCACCAACCAGACATTCTCGGACCATTGGATCCGTTCCAACGTGGTTCCGTTCTACCCCGAAACGCTCATTCGCTACCTCCTCGTCGGCAACGAACTCATCAGCAGCACAGGTAACGGAACATGGCCCCACATCGTTCCCGCGATGCGCAGAATCTCACACTCTCTGAAAGCCTTCCATTTGCACAAGGTCAAAGTCGGAACTCCACACGCCATTGACGTTTTGCAATCGTCGTTTCCTCCCTCAAACGGAACTTTCAGAAACGACATCGCGTTTCACGTCATCAAGCCCATGTTACACTTCCTCTACAAAACTCGCTCCTTCTTCTTCGTCGATGTGTACCCGTTTTTCTCTTGGGCCTCCGACCCGGTCCACATTAACCTCTCTTACACTCTCTTCGAGTCCAGAAACATAACCGTAACGGACCCGTTAACTGGGTTAATCTACACCAACCTATTCGACCAGATGGTTGACGCCGTTTATTTCGCCATGAAACGGCTCGGGTACCCAGGTATTCCGATCTTCATTGCGGAAACGGGTTGGCCCAATGGAGGAGACTTGGACCAAGTTGGCGCCAACGTTCACAATGCCGCCACGTACAACAGAAACATAGTGAAGAGGCTTACAAGAAAACCGGTTTTGGGAACCCCGGCTCGACCGGGTTTGGTTCTTCCGGCTTTTATATTTTCGCTTTATAATGAGAACTTAAAGCCGGGTTTAGGTTCGGAGCGGCATTTTGGGCTATTGTACCCGAACGGGTCAAAGGTTTACGACATTGATCTCTCCGGCAAGACGCCGGAGTCAGAGCTCGCGCCAATTCCACCGGCGGTGGATTATAAGGGGAAGGCGTGGTGTGTGGTGGCCGAGGGGGCAAATGTGACGGCGGTGGCAGCGGCGTTATCATACGCGTGCTCTCAGGGAAACGGAACCTGTGACGCGATCCAACCCGGTAACCCGTGTTTTAAACCCGATTCCGTTACGGGTCATGCTGATTATGCGTTCAGTGCTTATTGGGCGCAGTTTAGGCGCGTGGGTGGAACGTGCTTTTTCAATGGGTTTGCAACCCAAACGGCAAAGGATCCAAGTTATGGTTCTTGCAAGTTTCCAAGTGTGACACTTTGA 1383 0.5163 MAMPLIPLFIFFFSFSISRGERSGGVGVNYGQLGNNLPPPRISVRLIQSLKAKSVKIYDANAEILEALRNTGIQVSIMLPNELVVNTSTNQTFSDHWIRSNVVPFYPETLIRYLLVGNELISSTGNGTWPHIVPAMRRISHSLKAFHLHKVKVGTPHAIDVLQSSFPPSNGTFRNDIAFHVIKPMLHFLYKTRSFFFVDVYPFFSWASDPVHINLSYTLFESRNITVTDPLTGLIYTNLFDQMVDAVYFAMKRLGYPGIPIFIAETGWPNGGDLDQVGANVHNAATYNRNIVKRLTRKPVLGTPARPGLVLPAFIFSLYNENLKPGLGSERHFGLLYPNGSKVYDIDLSGKTPESELAPIPPAVDYKGKAWCVVAEGANVTAVAAALSYACSQGNGTCDAIQPGNPCFKPDSVTGHADYAFSAYWAQFRRVGGTCFFNGFATQTAKDPSYGSCKFPSVTL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01541 460 FunFam Glucan endo-1,3-beta-glucosidase 14 24 353 - -
Spst4g01541 460 SUPERFAMILY (Trans)glycosidases 26 347 IPR017853 -
Spst4g01541 460 Gene3D - 366 458 - -
Spst4g01541 460 SMART X8_cls 370 455 IPR012946 -
Spst4g01541 460 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
Spst4g01541 460 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 13 444 IPR044965 GO:0004553|GO:0005975
Spst4g01541 460 FunFam Glucan endo-1,3-beta-glucosidase 4 365 459 - -
Spst4g01541 460 Pfam X8 domain 371 442 IPR012946 -
Spst4g01541 460 Gene3D Glycosidases 25 354 - -
Spst4g01541 460 Pfam Glycosyl hydrolases family 17 26 347 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01541 Spst-Chr4 54422616 54425554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01541 26 460 Glycoside Hydrolase AT3G23770 52.834 3.82e-175 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01541 - - ccaj:109805358 756.133