Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01347 ATGGTGGCAGATTCTAACTCCAAATCCGATCTCTCCTTCGGCAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAGGTGTGTACTATTCCGTTGGACACTGCCAAAGTTAGGCTTCAGCTTCAAAAACAAGCTGCAGCTGGTGATGTAATCTCCTTACCTAAATATAAGGGTATGCTGGGAACGGTTGGTACAATTGCCAGGGAAGAAGGTCTTTCAGCACTCTGGAAGGGAATTGTGCCAGGGTTACATCGTCAGTGTTTGTATGGAGGTTTAAGAATTGGGTTATATGAGCCTGTTAAGGCTTTCTATGTGGGGAAGGACCATGTTGGAGATGTTCCATTGTCAAAGAAAATTCTTGCTGCATTCACAACGGGCGCCGTGGCAATTGCAGTGGCAAATCCAACTGATCTTGTCAAAGTTAGACTTCAAGCAGAAGGAAAACTACCTCCTGGTGTTCCCAGGCGCTACTCTGGATCTTTAAATGCTTATTCAACGATTGTGAGACAGGAAGGAGTTGGGGCTCTTTGGACCGGGCTTGGCCCCAATATAGCAAGAAATGGTATCATCAATGCTGCTGAATTAGCCAGTTATGATCAAGTGAAGCAGACTATTTTGAAAATTCCAGGATTCACTGACAACGTTGTGACTCATCTCCTTGCTGGTCTTGGGGCAGGGTTTTTCGCCGTCTGTATTGGCTCCCCAGTAGATGTGGTTAAGTCGAGAATGATGGGAGATTCTAGTTACAAGAACACCCTTGATTGTTTTATCAAAACGTTAAAGAATGATGGACCCATGGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTCTCACCTTAGAACAGACTAAAAAGTTCGTCAAAAGTTTAGAGTCATCCTGA 918 0.4434 MVADSNSKSDLSFGKIFASSAFSACFAEVCTIPLDTAKVRLQLQKQAAAGDVISLPKYKGMLGTVGTIAREEGLSALWKGIVPGLHRQCLYGGLRIGLYEPVKAFYVGKDHVGDVPLSKKILAAFTTGAVAIAVANPTDLVKVRLQAEGKLPPGVPRRYSGSLNAYSTIVRQEGVGALWTGLGPNIARNGIINAAELASYDQVKQTILKIPGFTDNVVTHLLAGLGAGFFAVCIGSPVDVVKSRMMGDSSYKNTLDCFIKTLKNDGPMAFYKGFLPNFGRLGSWNVIMFLTLEQTKKFVKSLESS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01347 305 Pfam Mitochondrial carrier protein 114 209 IPR018108 -
Spst4g01347 305 Pfam Mitochondrial carrier protein 10 108 IPR018108 -
Spst4g01347 305 Pfam Mitochondrial carrier protein 216 300 IPR018108 -
Spst4g01347 305 FunFam Mitochondrial uncoupling protein 1 14 303 - -
Spst4g01347 305 Gene3D Mitochondrial carrier domain 13 304 IPR023395 -
Spst4g01347 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 119 206 IPR018108 -
Spst4g01347 305 PANTHER MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED 15 297 - -
Spst4g01347 305 PRINTS Mitochondrial brown fat uncoupling protein signature 169 186 IPR002030 GO:0006839|GO:0031966
Spst4g01347 305 PRINTS Mitochondrial brown fat uncoupling protein signature 99 111 IPR002030 GO:0006839|GO:0031966
Spst4g01347 305 PRINTS Mitochondrial brown fat uncoupling protein signature 46 65 IPR002030 GO:0006839|GO:0031966
Spst4g01347 305 PRINTS Mitochondrial brown fat uncoupling protein signature 287 305 IPR002030 GO:0006839|GO:0031966
Spst4g01347 305 PRINTS Mitochondrial brown fat uncoupling protein signature 212 230 IPR002030 GO:0006839|GO:0031966
Spst4g01347 305 PRINTS Mitochondrial brown fat uncoupling protein signature 18 30 IPR002030 GO:0006839|GO:0031966
Spst4g01347 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 298 IPR018108 -
Spst4g01347 305 SUPERFAMILY Mitochondrial carrier 10 294 IPR023395 -
Spst4g01347 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 105 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01347 Spst-Chr4 50849266 50853405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01347 8 305 Miscellaneous Gene Families AT3G54110 83.612 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01347 K15103 - gmx:100809667 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00672 1 8888892 8892709 Spst4g01347 4 50849266 50853405 PCT