Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01242 ATGAAAGGGAGAATGGAAGCGCTAAAACTGTGCACTCTAACATGGAACCCACTGAAGCACTTTTTTCACTCTCACGCATTTCGTCGAACACCTCGAACGCTCGTTATCCGCGCCTGCTCTTCGTCCACCGCAGCCGATACCAGGGCCGCTGGTCGTAATCGCCGGGGCTCGGCGTCGTCGTCCACCACTTCGACTTCCGATAGGGACGCCATTCGAGCCATTCGCTTGAAGAAGGTTGAAGAGTTGAGAATCAAGGGGCTTGATCCGTATGCTTATGAATGGGACAAAACTCACGGTGCTAGTCAGCTGCAAGAGATCTACATAGATTTAGCAAATGGTGAGGAAAAAAATAGTGAGAGTGACCACGTATCTGTTGCGGGAAGAATTGTTGCCAGGAGGGCATTCGGAAAGCTTGCCTTTCTCACACTAAGAGATGATTCAGGGACAATTCAGCTCTATTGTGATAAGGAGAGACTCATCGGTGATCAGTTCGAACTGTTAAAGGCACATGTTGATATTGGTGATATAGTAGGTGTAAGAGGGACAATAAAACGCACAGAAAAAGGAGAACTTTCTGTGTATGTTCTATCTTTTGCAATCCTTACAAAATCTCTGCTTCCACTGCCTGACAAATATCATGGACTAACTGATATAGATAAACGTTATAGACAGAGGTATGTAGATATGATTGCAAATCCAGAGGTAGCAGATGTATTCCGTAAAAGAGCAAAGGTTGTATCGGAGATACGGAGGACAATGGATTCTTTAGGTTTTGTTGAAGTTGAAACTCCAGTTTTGCAGGGAGCAGCTGGGGGAGCAGAAGCCAGACCATTTATTACATACCATAATTCTTTAGGAAGAGACCTATATCTGAGAATTGCAACTGAATTACATCTGAAGAGAATGCTGGTGGGTGGTTTTGAAAAAGTATACGAGATTGGCCGAATATTTAGAAATGAAGGAATTTCAACTCGACATAATCCTGAATTTACAACTATAGAGATGTACGAAGCATACTCGGATTATCAAAGCATGATGAATTTGGCGGAGGAGATTGTCACCAGATGTGCTCTTGGAGTTCATGGGAAGCTTACATTTGATTATCAGGGAGTCGAGATATGTCTGGAAAGGCCCTGGAGGAGGGAGACTATGCACAATCTTGTTAAAGAAATTGCCGGGATCGATTTCAATGATTTGGGAAATGATTTTGAGGTTGCAAAGCGGGTTACTCAGGATACCCTAGAAAAGAATCTTGATAACAAGGATAAAGGTTCCATTGAAGCATGCCGATCTGTTGGCCACCTCCTTAACGAGGTTTTTGAGATTTTTGTAGAACCAAAGCTCATCCAACCTACTTTCGTTCTAGACTATCCAATTGAGATATCTCCACTTGCCAAACCACACAGAAGATCCACAGGTTTGACAGAGAGATTCGAACTTTTCATTTGTGGTCGTGAGTTGGGCAATGCATTCTCTGAATTGACTGATCCTATAGATCAGAGGGGACGCTTGGAAGATCAAATTAGACAGCATGAAAAGAAGAGGTTAGCTGTTTCAACAAATGATGATAAAAAGGAAGTAAAGGAAGATGACGATGACTCGTATGAAGTGACTCTTGATGATGACTTTCTCACAGCTTTGGAATACGGAATGCCTCCAGCTTCTGGAATGGGACTTGGAATTGATAGGCTCGTGATGCTTTTGACAAATTCTCCCAGTATTCGAGATGTTATCGCCTTCCCAGTACTCAAGGTGCAGCAATAG 1764 0.4314 MKGRMEALKLCTLTWNPLKHFFHSHAFRRTPRTLVIRACSSSTAADTRAAGRNRRGSASSSTTSTSDRDAIRAIRLKKVEELRIKGLDPYAYEWDKTHGASQLQEIYIDLANGEEKNSESDHVSVAGRIVARRAFGKLAFLTLRDDSGTIQLYCDKERLIGDQFELLKAHVDIGDIVGVRGTIKRTEKGELSVYVLSFAILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRKRAKVVSEIRRTMDSLGFVEVETPVLQGAAGGAEARPFITYHNSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNLAEEIVTRCALGVHGKLTFDYQGVEICLERPWRRETMHNLVKEIAGIDFNDLGNDFEVAKRVTQDTLEKNLDNKDKGSIEACRSVGHLLNEVFEIFVEPKLIQPTFVLDYPIEISPLAKPHRRSTGLTERFELFICGRELGNAFSELTDPIDQRGRLEDQIRQHEKKRLAVSTNDDKKEVKEDDDDSYEVTLDDDFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIRDVIAFPVLKVQQ 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01242 587 FunFam Lysine--tRNA ligase 68 210 - -
Spst4g01242 587 PRINTS Lysyl-tRNA synthetase signature 299 312 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Spst4g01242 587 PRINTS Lysyl-tRNA synthetase signature 270 286 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Spst4g01242 587 PRINTS Lysyl-tRNA synthetase signature 450 466 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Spst4g01242 587 PRINTS Lysyl-tRNA synthetase signature 317 334 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Spst4g01242 587 PRINTS Lysyl-tRNA synthetase signature 254 264 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Spst4g01242 587 Gene3D Bira Bifunctional Protein; Domain 2 213 587 IPR045864 -
Spst4g01242 587 CDD LysRS_core 232 584 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Spst4g01242 587 FunFam Lysine--tRNA ligase 213 587 - -
Spst4g01242 587 SUPERFAMILY Class II aaRS and biotin synthetases 217 583 IPR045864 -
Spst4g01242 587 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 239 581 IPR006195 -
Spst4g01242 587 PANTHER LYSYL-TRNA SYNTHETASE 53 586 - -
Spst4g01242 587 Pfam tRNA synthetases class II (D, K and N) 219 583 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Spst4g01242 587 CDD LysRS_N 122 229 IPR044136 GO:0000166
Spst4g01242 587 Hamap Lysine--tRNA ligase [lysS]. 74 586 IPR002313 GO:0004824|GO:0005524|GO:0006430
Spst4g01242 587 NCBIfam lysine--tRNA ligase 73 585 IPR002313 GO:0004824|GO:0005524|GO:0006430
Spst4g01242 587 Pfam OB-fold nucleic acid binding domain 123 198 IPR004365 GO:0003676
Spst4g01242 587 SUPERFAMILY Nucleic acid-binding proteins 68 210 IPR012340 -
Spst4g01242 587 Gene3D - 61 212 IPR012340 -
Spst4g01242 587 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01242 Spst-Chr4 47285338 47298475 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01242 K04567 - gmx:100787720 1055.82