Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01241 ATGGCAGCATCGACAGAGGTTGAGAAGAAGAATCTGAAAGAGGAGCCGGAACAAGTTGTGAATCCATGGGAGGTCTCTTCCAAAGGCAAAATCGATTACGACAAGCTCATCGACCGTTTTGGTTGCCAGAAGCTCGACGACACTCTCATTTCGCGCCTTGAACGCCTCACCTCGCGCGCTCCGCACGTCTTTCTACGACGCGGTGTTTTCTTCGCCCACCGCGATTTTGCGGATATTCTGGACGCGTACGAGAGAGGCGATAAATTCTACTTGTACACCGGACGCGGACCTTCTTCCGAAGCGTTGCACTTGGGGCATTTGATTCCCTTCATGTTCACTAAGTATTTGCAAGATGTGTTTAAGGTTCCTCTGGTTATACAGCTCACTGATGATGAAAAGTTCTTCTGGAAAAATCTTACTGTAGAGGAGTGCCGAAGACTTGCAAGGGAGAATGCAAAGGATATTATTGCTTGTGGTTTTGACATTTCAAAGACGTTCATCTTTTCTGATTTTAATTATGTTGGCGGTTCCTTCTATAAGAACATGTGTGAGGTTGCAACACGTGTGACTTATAACCAGGCAGTTGGCATCTTTGGTTTTGCTGGGGAAGACCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGGCTGTTCCATCATTTCCTAGTTCATTTCCTCACCTATTTTCTGGAAAAGAGAATCTCCGGTGTTTAATTCCTTGTGCAATTGACCAGGATCCATATTTTAGAATGACGCGTGATGTTGCTCCGCGAATGGGTTTCAACAAGCCAGCCCTCATTGAATCATTATTTTTCCCTGCATTACAGGGGGAAACAGGAAAAATGTCTGCCAGTGATCCCAACTCTGCAATATATGTGACTGATTCTGCAAAAGATATAAAGAACAAGGTAAACAAGCATGCGTTTTCTGGTGGGCAAGATTCTGTTGAAAAACATAGGCAATTGGGGGCAAATCTTGAGGTAGATATACCAATTAAATACCTAACTTTTTTCCTAGAAGATGATGCTGAACTCGAACACATCAAGAAGGAATATGGAGAAGGGCGCATGCTAACTGGTGAGGTAAAGCAACGGCTAATTCAAGTCTTGACTGAACTAGTGGAAAGACATCGTAGGGCTCGAGCTTCTGTGACTGAAGAGATGGTGGATGCATTTATGGCTGTCAGACCACTTCCCCACATGTTTGACTAG 1209 0.4433 MAASTEVEKKNLKEEPEQVVNPWEVSSKGKIDYDKLIDRFGCQKLDDTLISRLERLTSRAPHVFLRRGVFFAHRDFADILDAYERGDKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDVFKVPLVIQLTDDEKFFWKNLTVEECRRLARENAKDIIACGFDISKTFIFSDFNYVGGSFYKNMCEVATRVTYNQAVGIFGFAGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKENLRCLIPCAIDQDPYFRMTRDVAPRMGFNKPALIESLFFPALQGETGKMSASDPNSAIYVTDSAKDIKNKVNKHAFSGGQDSVEKHRQLGANLEVDIPIKYLTFFLEDDAELEHIKKEYGEGRMLTGEVKQRLIQVLTELVERHRRARASVTEEMVDAFMAVRPLPHMFD 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01241 402 NCBIfam tryptophan--tRNA ligase 88 393 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Spst4g01241 402 FunFam tryptophan--tRNA ligase, cytoplasmic 13 284 - -
Spst4g01241 402 Pfam tRNA synthetases class I (W and Y) 87 372 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Spst4g01241 402 CDD TrpRS_core 90 372 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Spst4g01241 402 Gene3D - 284 401 - -
Spst4g01241 402 PRINTS Tryptophanyl-tRNA synthetase signature 236 257 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Spst4g01241 402 PRINTS Tryptophanyl-tRNA synthetase signature 280 290 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Spst4g01241 402 PRINTS Tryptophanyl-tRNA synthetase signature 102 118 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Spst4g01241 402 PRINTS Tryptophanyl-tRNA synthetase signature 154 173 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Spst4g01241 402 Gene3D HUPs 7 283 IPR014729 -
Spst4g01241 402 PANTHER TRYPTOPHANYL-TRNA SYNTHETASE 5 398 - -
Spst4g01241 402 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 97 107 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Spst4g01241 402 FunFam Tryptophan--tRNA ligase, cytoplasmic 285 402 - -
Spst4g01241 402 SUPERFAMILY Nucleotidylyl transferase 17 395 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01241 K01867 - gmx:100787194 767.689