Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01228 ATGCTGGACAGCAAAGTGTTGAAACGAGAATCTATAGCAGAGATGTTAATGTTGAGATGGAGTGATTTGGCCATGGAGTGCCTATTGATTGATCCTAAAGAGCATCCTATGCTCCTGGCAGAGCCTTCTTCAAACTCTCAACAACAGAGGGAAAGGACAGCAGAGCTTATGTTTGAGAAGTACAAAGCACCTGCATTGTTTTTGGCGAAGAATGCTGTTCTGACTTCTTTTGCATCGGGGCGTGCTACGTCATTAGTTGTTGATGGCGGTGGAGGGTCAACTACAGTTGCACCGGTACTTGATGGTTATGTTCTTCAGAAGGCTGTGGCAACCTCTCCAATTGGAGGAGAATTTCTTACAGATTGCTTGATGAAAAGCTTGGAAAGCAAGGGTATTACGATGAAACCACGTTATTCCTTTAGGAGAAAGGAAATACGCCCTGGAGAGTTTCAGACAGTAGATCTTGATTTTCCAAATACAACTGAAAGCTATAAACTATATTCACAGAGGGTGATTGCTAGTGATATCAAGGAATGTGTGTGCCGAGCTCCGGATACACCTTATGATGAGAGTGCATATTCAAACATCCCAATGACCTCATATGAGCTTCCTGATGGCCAGACCATTGAAATTGGAGCTGACAGATTTAAGATTCCAGATGTTCTTTTCAATCCGATCGTGGTTCAGTCAATTCCTGGAATGGAGAGCTTTGCAGAAATTGCTCCTTCAGTTCGAGGCCTGCCTCAAATGGTCATTGAAAGCATTAACAAGTGTGATGTAGACATTCGAAGAGAGTTGTTTAGTAGTATACTGCTTGCTGGTGGTACAGCTTCAATGCAACAACTAAAGGAACGCCTTGAGAAAGACTTGCTAGAGGAGTCCCCTCAAGCTGCCAGAGTAAAAGTATTGGCCAGTGGGAATGCTACTGAAAGAAGATTTAGCGTTTGGATAGGGGGTAGTATATTGGCATCTCTTGGCTCCTTCCAGCAAATGTGGTTCTCCAAATCCGAGTATGAAGAGCATGGAGCTTCATATATCCAAAGGAAGTGTCCATGA 1056 0.4356 MLDSKVLKRESIAEMLMLRWSDLAMECLLIDPKEHPMLLAEPSSNSQQQRERTAELMFEKYKAPALFLAKNAVLTSFASGRATSLVVDGGGGSTTVAPVLDGYVLQKAVATSPIGGEFLTDCLMKSLESKGITMKPRYSFRRKEIRPGEFQTVDLDFPNTTESYKLYSQRVIASDIKECVCRAPDTPYDESAYSNIPMTSYELPDGQTIEIGADRFKIPDVLFNPIVVQSIPGMESFAEIAPSVRGLPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01228 351 Gene3D Actin; Chain A, domain 4 114 236 - -
Spst4g01228 351 Gene3D - 72 314 - -
Spst4g01228 351 PANTHER ACTIN 20 344 IPR004000 -
Spst4g01228 351 FunFam actin-related protein 4 293 351 - -
Spst4g01228 351 Pfam Actin 20 350 IPR004000 -
Spst4g01228 351 CDD NBD_sugar-kinase_HSP70_actin 32 110 - -
Spst4g01228 351 Gene3D - 20 344 - -
Spst4g01228 351 SUPERFAMILY Actin-like ATPase domain 80 350 IPR043129 -
Spst4g01228 351 PRINTS Actin signature 49 62 IPR004000 -
Spst4g01228 351 PRINTS Actin signature 74 93 IPR004000 -
Spst4g01228 351 PRINTS Actin signature 18 36 IPR004000 -
Spst4g01228 351 SUPERFAMILY Actin-like ATPase domain 18 87 IPR043129 -
Spst4g01228 351 SMART actin_3 2 351 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01228 Spst-Chr4 46846050 46862160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01228 20 350 Miscellaneous Gene Families AT3G53750 38.323 2.41e-72 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01228 K11340 - gmx:100785066 622.854