Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01192 ATGTATCAGTGGCGGAAGTTCGAGTTTTTCGAGGAAAAGTACGGTGCCAAGTGCTTGACTCCCGAGGGCGACGATGGAGGTGACGTCGTCGGGGAGAAGAAGATCGAGTGCTGCTCCAGCGGTAGGGGCAAAGTCGTCACCGGCTTCGACGACGGCGTCGTTTGCTTCTTCGATCGAGGCTTAAAGTTCAATTACGCTTTCCAACCTCATTCCTCTAACGTTCGCTTTCTTCAGCAACTCAAGCAACGCAATTTTCTGGTAACAATTGGAGAGGATGAACAGCTTACTCCCCAGCAATCAGCTTTGTGCCTCAAGGTTTTTGACCTTGACAAGATGCAACCAGAGAGTTCAAGCACAGCGAGTCCTGATTGTGTCGGGATATTGCGGATATTCACTAATCAGTTTCCTGAGGCAAAGATTACATCTTTTTTGGTTTTGGAAGAAGTGCCACCTATACTGCTCATAGCTATTGGATTGGACAATGGTTCTATTTACTGCATCAAAGGAGACATTGCCCGGGAGCGTATCACACGTTTCAAGCTTCAGGTTGAAAACAACCATTCAGACAAAACACTTTCTGCTGTCACTGGACTTGGGTTTAGGGTGGATGGTCAATCTCTACAGTTATTTGCTGTGACTCCAAGTTCAGTGAGCTTGTTTTCGTTGCATAATCAACCACCGCGAAGGCAAACCCTTGATCAGATTGGATGTGGTGTAAACGGTGTTGCAATGAGTGAACGCTCTGAGTTGATAATTGGTCGACCAGAGGCAGTATATTTTTATGAAGTTGATGGGCGTGGTCCTTGTTGGGCTTTTGAGGGAGAGAAGAAGTTGCTTGGATGGTTTCGTGGATACCTTTTATGTGTTATTGCAGATCAAAGAATAGGAAAACATACTTTCAACATCTATGACCTCAAGAATCGATTAATAGCCCACAGTGCATTGGTTAAAGAAGTTTCTCATATGCTTTATGAATGGGGTAACATCATACTCATAATGAATGACAAATCAGCTTTATGTATTGGAGAAAAGGATATGGAAAGCAAGTTAGACATGTTATTCAAGAAAAACCTATATTCTGTAGCCATTAATCTTGTACAGACTCAACAAGCAGATGCTGCAGCTACTGCTGAAGTGCTAAGGAAATATGGGGATCATCTATATAGCAAGCAAGACTATGATGAAGCAATGGCCCAGTACATTCTTACTATTGGTCACCTTGAACCTTCTTATGTTATACAGAAGTTTTTGGATGCTCAAAGAATCTATAACCTCACAAATTACTTAGAGAAGCTACATGAGAAGGGTCTTGCTTCTAAAGATCACACCACACTTCTATTAAACTGTTACACCAAATTGAAAGATGTTGAAAAGTTAAATCTATTTATTAAAAGTGACGATAGCATTGGGGAACTTAAATTTGATGTGGAAACAGCAATCAGGGTTTGCCGTGCTGCCAATTACCATGAGCATGCAATGTATGTTGCAAAGAAGGCAGGGAGGCATGAATGGTACTTGAAGATCTTGCTTGAAGATCTGGGTAGCTATGAAGAAGCCTTGGAATATATTTCGAGTCTTGAATCAAGTCAGGCAGGGATGACAGTAACGGAGTATGGGAAAATTTTGATAGAGCACAAGCCAGCAGAGACAATTCAGATTCTCATAAGGCTTTGCACGGAAGATGGTGACAAAAGAGGACGACGCCCAAAGGGAGTGTATATGTCTATGTTGCCATCTCCTGTTGATTTTCTTAGCATTTTCATTCATCATCCTCAGTCCCTTATGGATTTTCTAGAAAAGTATACGAGTAAAGTTAACGACTCACCTGCTCAAGTTGAGATTCATAATACCCTCTTAGAGTTGTATATATCCAATGAATTGAATTTTCCTTCGATGTCACAAGTTAATGATGGTATAAATGACCTTAATGGAGTATCAGCAAAAACTATGAGTGCTCAGTCTAATGGAAGCATTGCTGATCACGAAAGTTCTGAACAGGGAAAGGACCGTCTCGAAAGGCGTAAAAAGGGTTTACACTTGCTTAAGAGTGCATGGCCCCCAGAGACAGAACATCCACTATATGATGTTGATTTAGCAATTATACTATGTGAAATGAATGCATTCAAAGATGGGCTTTTGTATTTATATGAAAAGATGAAACTCTATAAAGAAGTGATTGCATGCTATATGCAGGCACATGATCACGAGGGGTTAATTGCATGCTGCAAAAGGCTGGGGGATTCAGTTAAAGGAGGGGACCCATCTCTTTGGGCTGATGTACTTAAATATTTTGGTGAGCTTGGAGAAGATTGTTCTAAAGAAGTAAAAGAAGTTCTGACCTATATTGACAGGGATGATATTTTGCCCCCTATAATTGTGCTTCAAACTCTCTCCCGAAATCCATGCCTCACACTTTCCGTGATCAAAGATTACATTGCTCGAAAGCTTGAGCGGGAATCAAAGATGATTGAGGAGGACCGACAAGCTATTGAGAAATATCAGGAAGATACACTGTCAATGAGAAAAGAGATTCAAGATCTTAGGACAAATGCTAGAATTTTTCAGCTTAGCAAGTGCACTGCATGCACCTTCACCCTTGATCTGCCAGCTGTGCACTTTATGTGCATGCATTCATTCCACCTGCGCTGCCTTGGCGATAATGAAAAAGAATGCCCTGAATGTGCTCCTGAATATAGGTCTGTCTTGGAAATGAAAAGAAATTTAGAGCAAAATTCTAAGGATCAGGACAGATTTTTCCACCAGGTGAAGAGCTCTAAAGATGGGTTTTCTGTCATTGCTGAATATTTTGGAAAAGGGATCATCAGCAAAATAAGTAATGGATCCAATTCTGAACCCAGATCCGGAACTGCATCATCCACTAGTGGTTTTTAA 2892 0.4122 MYQWRKFEFFEEKYGAKCLTPEGDDGGDVVGEKKIECCSSGRGKVVTGFDDGVVCFFDRGLKFNYAFQPHSSNVRFLQQLKQRNFLVTIGEDEQLTPQQSALCLKVFDLDKMQPESSSTASPDCVGILRIFTNQFPEAKITSFLVLEEVPPILLIAIGLDNGSIYCIKGDIARERITRFKLQVENNHSDKTLSAVTGLGFRVDGQSLQLFAVTPSSVSLFSLHNQPPRRQTLDQIGCGVNGVAMSERSELIIGRPEAVYFYEVDGRGPCWAFEGEKKLLGWFRGYLLCVIADQRIGKHTFNIYDLKNRLIAHSALVKEVSHMLYEWGNIILIMNDKSALCIGEKDMESKLDMLFKKNLYSVAINLVQTQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYILTIGHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNLFIKSDDSIGELKFDVETAIRVCRAANYHEHAMYVAKKAGRHEWYLKILLEDLGSYEEALEYISSLESSQAGMTVTEYGKILIEHKPAETIQILIRLCTEDGDKRGRRPKGVYMSMLPSPVDFLSIFIHHPQSLMDFLEKYTSKVNDSPAQVEIHNTLLELYISNELNFPSMSQVNDGINDLNGVSAKTMSAQSNGSIADHESSEQGKDRLERRKKGLHLLKSAWPPETEHPLYDVDLAIILCEMNAFKDGLLYLYEKMKLYKEVIACYMQAHDHEGLIACCKRLGDSVKGGDPSLWADVLKYFGELGEDCSKEVKEVLTYIDRDDILPPIIVLQTLSRNPCLTLSVIKDYIARKLERESKMIEEDRQAIEKYQEDTLSMRKEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVLEMKRNLEQNSKDQDRFFHQVKSSKDGFSVIAEYFGKGIISKISNGSNSEPRSGTASSTSGF 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01192 963 SUPERFAMILY RING/U-box 835 899 - -
Spst4g01192 963 SUPERFAMILY WD40 repeat-like 37 253 IPR036322 GO:0005515
Spst4g01192 963 Coils Coil 813 850 - -
Spst4g01192 963 FunFam Vacuolar protein sorting-associated protein 11 homolog 33 315 - -
Spst4g01192 963 Pfam Region in Clathrin and VPS 408 531 IPR000547 GO:0006886|GO:0016192
Spst4g01192 963 CDD RING-H2_Vps11 857 897 - -
Spst4g01192 963 Pfam Vacuolar protein sorting protein 11 C terminal 899 941 IPR024763 -
Spst4g01192 963 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 942 - -
Spst4g01192 963 FunFam Vacuolar protein sorting-associated protein 11 homolog 350 637 - -
Spst4g01192 963 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 568 773 IPR000547 GO:0006886|GO:0016192
Spst4g01192 963 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 400 551 IPR000547 GO:0006886|GO:0016192
Spst4g01192 963 Gene3D Tetratricopeptide repeat domain 351 628 IPR011990 GO:0005515
Spst4g01192 963 Gene3D - 34 310 IPR015943 GO:0005515
Spst4g01192 963 ProSiteProfiles Zinc finger RING-type profile. 859 894 IPR001841 -
Spst4g01192 963 PIRSF Vps11 1 575 IPR016528 -
Spst4g01192 963 PIRSF Vps11 567 949 IPR016528 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01192 K20179 - gmx:100793279 1788.47