Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01163 ATGTCGACTCTTCACCTTCACTCCGCTGCCACTTCTTCCCCTGCCTTCTCTCCGATCACATCTTCTCGTTTTTTCCAAACCTCTCGCATCTCGCTCCAGAACGCCGTCCGCTGTAAGGCCACAGAAACAGTGAAGTTGGAGAATGGGAGGCCGAGCGCCAGCGAGTTCGTCGTCAGCGGAAACTCGATTCCGAGCTACGTCATGGCGCCGAATGCGCGGATTCAGGATTTGGTTAACCGGAACGACACGCGTCTGAGGATATTCTCCGGTACCGCCAATCCTGCGCTTGCTCAGGAAATTGCGTGCTACCTGGGCCTGGAGCTAGGAAAAATTAAAATAAAGCGTTTTGCTGATGGTGAGATATATGTTCAGCTCCAAGAGAGTGTCAGGGGTTGTGATGTGTTTCTTGTGCAACCCACATGTCCTCCTGCAAATGAGAATCTTATGGAGCTTCTCATAATGATTGATGCCTGCAGGAGAGCTTCAGCCAAAAATATTACTGCTGTCATTCCATATTTTGGATATGCCAGAGCTGATAGAAAGACTCAAGGGCGAGAATCCATTGCTGCGAAGCTTGTAGCAAATTTAATTACAGAAGCGGGTGCAAATCGTGTACTTGCTTGTGATCTCCATTCTGGCCAATCCATGGGCTATTTTGATATTCCTGTGGATCATGTGTATGGACAGCCTGTCATACTTGATTACCTTGCCAGCAAAACTATTTGTTCAGACGATTTGGTAGTTGTCTCGCCAGATGTTGGTGGTGTTGCCAGAGCACGTGCTTTTGCCAAAAAACTATCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGCCATGGGCATAATGTTGCTGAGGTGATGAACTTGATAGGTGATGTAAGGGGAAAGGTAGCAGTTATGGTAGATGACATGATTGATACTGCTGGGACTATTGCCAAAGGTGCTGCACTGTTGCATCAAGAAGGGGCAAGGGAAGTCTATGCATGCACCACGCATGCTGTTTTCAGTCCTCCTGCTATCGAGAGGTTATCAAGCGGTTTGTTCCAAGAAGTTATTATAACGAATACAATTCCAGTGGCAGAACAGAACTATTTCCCCCAATTAACTGTCCTATCGGTGGCAAACCTTCTGGGCGAGACTGTATGGCGAGTTCATGATGATTGCTCAGGTGGAATTGAACCTTATTCAAGTTTGGGCATTGATTGA 1206 0.4693 MSTLHLHSAATSSPAFSPITSSRFFQTSRISLQNAVRCKATETVKLENGRPSASEFVVSGNSIPSYVMAPNARIQDLVNRNDTRLRIFSGTANPALAQEIACYLGLELGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVRGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACTTHAVFSPPAIERLSSGLFQEVIITNTIPVAEQNYFPQLTVLSVANLLGETVWRVHDDCSGGIEPYSSLGID 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01163 401 Hamap Putative ribose-phosphate pyrophosphokinase [prs]. 85 395 IPR037515 GO:0004749
Spst4g01163 401 SUPERFAMILY PRTase-like 150 386 IPR029057 -
Spst4g01163 401 Gene3D - 228 371 IPR029057 -
Spst4g01163 401 NCBIfam ribose-phosphate diphosphokinase 86 388 IPR005946 GO:0000287|GO:0004749|GO:0009165
Spst4g01163 401 FunFam Ribose-phosphate pyrophosphokinase 88 240 - -
Spst4g01163 401 Pfam Phosphoribosyl synthetase-associated domain 286 389 IPR005946 GO:0000287|GO:0004749|GO:0009165
Spst4g01163 401 Pfam N-terminal domain of ribose phosphate pyrophosphokinase 85 201 IPR029099 -
Spst4g01163 401 ProSitePatterns Phosphoribosyl pyrophosphate synthase signature. 209 224 IPR000842 GO:0000287|GO:0004749|GO:0009156|GO:0044249
Spst4g01163 401 PANTHER RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER 84 389 IPR005946 GO:0000287|GO:0004749|GO:0009165
Spst4g01163 401 CDD PRTases_typeI 244 356 IPR000836 -
Spst4g01163 401 Gene3D - 88 386 IPR029057 -
Spst4g01163 401 SMART Pribosyltran_N_2 85 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01163 Spst-Chr4 44949039 44957607 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01163 K00948 - gmx:100789585 738.028