Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01161 ATGGCTTCTTCTTCTCGTTCTCGTTTGATGTTGCAATTACAGAGTTCTCCGCGACTAATGCTACGACTCTCACCCTTTCTCGCCATTCCTTCTCCTTCTTCTTCTCTCTCTTTCTCCTCCAACTTCCGCGTGTCCTCTTCAGCTCAACCCACACTTCAACAGCCATATCCGCGAAGCTCAGAAATTGTGGCATTGGAATATGCTGACCTCAATCTCTCTTACAACTTGGATCTGGGTCACGTCAGGATCAGGCAACATGTTAATCCTCTAAGCTCTTCTTTCTCTGTTCCTGCACAAGTACCAGACTGGAACCAGGTCTTTGCAGACCCAACGTTGCCACTCATGGTGGACATTGGATGTGGCAGTGGCAGATTTCTAATGTGGCTGGCTAAAAGAACTCCTAAAGAGAGAAATTTTTTGGGATTGGAAATAAGGCAAAGGATAGTCAAGCGTGCTGAGATATGGGCAAAAGATCTGGCTCTCAATAACATACATTTCTTGTTTGCAAATGCCACAATTTCTTTCAAGCAGTTGGTAGAATCATATCCAGGGCCCTTGGTCTTAGTTTCAATTTTGTGTCCGGACCCACATTTCAAGAAAAGACATCATAAAAGAAGAGTTCTCCAGAAGCCCTTAGTTGGTGCTATAGTGGATAATTTAATGCTCGGGGGACAGGTATTTGTGCAGTCTGATGTGCTTCAAGTGGCACTTGACATGAGAAATCAGTTTGATGAAGTTGAAGCACTGAAACATTTAGATGTTTCCAACCCAGCTATTTTGTGTGACAGTGAAGGCTGGTTGTTAAGTAACCCCATGGGAATAAGGACTGAGAGAGAGATTCATGCAGAACTCGAAGGTGCAAAAATATTTAGAAGATTAATTGCACAGGTAATTGTCCAAGCAATGTATAAGGTAGGGAAGATCAGGTAA 930 0.4323 MASSSRSRLMLQLQSSPRLMLRLSPFLAIPSPSSSLSFSSNFRVSSSAQPTLQQPYPRSSEIVALEYADLNLSYNLDLGHVRIRQHVNPLSSSFSVPAQVPDWNQVFADPTLPLMVDIGCGSGRFLMWLAKRTPKERNFLGLEIRQRIVKRAEIWAKDLALNNIHFLFANATISFKQLVESYPGPLVLVSILCPDPHFKKRHHKRRVLQKPLVGAIVDNLMLGGQVFVQSDVLQVALDMRNQFDEVEALKHLDVSNPAILCDSEGWLLSNPMGIRTEREIHAELEGAKIFRRLIAQVIVQAMYKVGKIR 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01161 309 Pfam Putative methyltransferase 113 290 IPR003358 GO:0006400|GO:0008176
Spst4g01161 309 ProSiteProfiles SAM-dependent methyltransferase TRMB-type domain profile. 71 297 IPR003358 GO:0006400|GO:0008176
Spst4g01161 309 Gene3D Vaccinia Virus protein VP39 83 303 IPR029063 -
Spst4g01161 309 NCBIfam tRNA (guanosine(46)-N7)-methyltransferase TrmB 99 256 IPR003358 GO:0006400|GO:0008176
Spst4g01161 309 FunFam tRNA (Guanine-N(7)-)-methyltransferase 82 300 - -
Spst4g01161 309 CDD AdoMet_MTases 116 172 - -
Spst4g01161 309 PANTHER 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE 62 294 IPR003358 GO:0006400|GO:0008176
Spst4g01161 309 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 250 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01161 Spst-Chr4 44933418 44939188 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01161 K03439 - gmx:100788255 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01161 4 44933418 44939188 Spst4g01161 4 44933418 44939188 ECH