Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01145 ATGGCGTTGTTGAGTGGTGGCACGCCATGGTCCAAAGTCATTGCTCCTCCCATTTTCCACCGTTCTCACGCCCCTCGCACCTTCTTATTCTTCAAACGACGCCGTTTCTCAGTCTCTGCTCTCTCCGAACAAATACCCGTTCGCGTCCGTTTCGCTCCGTCTCCCACCGGCAACCTCCATGTCGGCGGTGCTCGAACGGCCCTCTTCAATTATTTGTTCGCCAGGTCCAAAGGTGGGAAGTTTGTGCTCAGAATTGAGGACACTGACTTGGAGAGGTCCACAAGGGAGTCCGAGGAGGCCATGCTCAAAGATCTCTCATGGCTTGGACTTGATTGGGATGAAGGGCCTGGTGTTGGAGGGGATTATGGTCCTTATAGGCAGTCTGAGAGGAATTCTTTATACAAACAGTATGCGGAGAACCTACACCAATCTGGTCATGTTTATCGCTGTTTTTGTTCTAATGAGGAACTAGAGAAAATGAAGGAGGATGCTAAACTAAAGCAACTGCCACCAGTGTACACAGGTAAATGGGCCAGTGCAAGACATGAGGAAGTAGAAGAAGAGCTGGCAAAAGGAACTCCTTATACATACCGGTTTCGAGTACCTAAAGGAAGTTTGAAAATTAATGACCTAATTAGAGGCGAAGTTAGTTGGAACTTGGATACACTTGGAGATTTTGTTATAATGAGGAGTAATGGTCAGCCTGTTTATAACTTCTGTGTAACGGTGGATGATGCTACCATGGCAATTTCCCATGTTATCAGGGCAGAGGAGCATTTACCAAACACTCTAAGGCAGGCCTTAATATATAAGGCGCTAGGATTTCCCATGCCTTACTTTGCGCATGTATCCTTGATTTTAGCTCCTGATCGGAGCAAATTATCAAAACGACATGGAGCAACATCAGTGGGTCAGTTCCGAGAGATGGGATACCTACCGGAAGCAATGGTGAATTACCTAGCATTATTAGGTTGGGGAGATGGGACTGAAAATGAGTTTTTTGCGCTTGATCAACTTGTTGAAAAATTCACTATAGAACGTGTTAATAAAAGTGGTGCTATCTTTGACTCAACGAAGTTAAGGTGGATGAATGGTCAACATTTAAGAGCACGTCACTCAGATGAATTGACCAAAGTTATTGGAGAATACTGGAAGACATCTGGCATACTCACTGTATCAGCTGGGCCCTTTGTTGATGAAGCAGTTCAACTACTTAAGGATGGGATTGACTTGATAAATGATGCAGACAAGGCCCTTGCAAACTTGCTTTCTTATCCTTTACATTCTACATTACAGAGTGATGAAGCAGAACCTTTGTTGCAAGATAATCTTTCTGAGTTTGCTGCTAGCCTCGTGGCCGCCTATGACAGTGGTGATCTGGTGGCAGCACTTGAAGAAGGCCATACTGGCTGGCAAAAGTGGGTGAAAGGCTTCGGTAAATCGCTGAAGCGGAAGGGAAAATCGCTTTTCATGCCTCTCCGAGTTCTGTTGACTGGAAAACTTCATGGACCTGACATGGGGGCAAGTGTTGTATTGCTCTATAAAGCTGTAACCACTGTTGTAGTGGCTCCTGAAGCTGGCTTTGTGACACTGGATGAAAGATTCAAAATGCTTAGGCAAATCAACTGGGAGACATTGTCCAAGGATCAACCTGTCAAAGAGACTGCTGCTCCTGTCTAA 1680 0.4542 MALLSGGTPWSKVIAPPIFHRSHAPRTFLFFKRRRFSVSALSEQIPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEEAMLKDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYAENLHQSGHVYRCFCSNEELEKMKEDAKLKQLPPVYTGKWASARHEEVEEELAKGTPYTYRFRVPKGSLKINDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFPMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPEAMVNYLALLGWGDGTENEFFALDQLVEKFTIERVNKSGAIFDSTKLRWMNGQHLRARHSDELTKVIGEYWKTSGILTVSAGPFVDEAVQLLKDGIDLINDADKALANLLSYPLHSTLQSDEAEPLLQDNLSEFAASLVAAYDSGDLVAALEEGHTGWQKWVKGFGKSLKRKGKSLFMPLRVLLTGKLHGPDMGASVVLLYKAVTTVVVAPEAGFVTLDERFKMLRQINWETLSKDQPVKETAAPV 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01145 559 FunFam Glutamate--tRNA ligase, mitochondrial 40 371 - -
Spst4g01145 559 Pfam tRNA synthetases class I (E and Q), catalytic domain 47 362 IPR020058 GO:0004812|GO:0005524|GO:0043039
Spst4g01145 559 PRINTS Glutamyl-tRNA synthetase signature 79 92 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Spst4g01145 559 PRINTS Glutamyl-tRNA synthetase signature 50 62 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Spst4g01145 559 PRINTS Glutamyl-tRNA synthetase signature 251 259 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Spst4g01145 559 PRINTS Glutamyl-tRNA synthetase signature 64 75 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Spst4g01145 559 PRINTS Glutamyl-tRNA synthetase signature 235 245 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Spst4g01145 559 NCBIfam glutamate--tRNA ligase 47 516 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Spst4g01145 559 Pfam Anticodon binding domain 396 515 IPR045462 -
Spst4g01145 559 CDD GluRS_core 47 369 IPR033910 GO:0006424|GO:0008270
Spst4g01145 559 Hamap Glutamate--tRNA ligase [gltX]. 46 545 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Spst4g01145 559 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 53 64 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Spst4g01145 559 Gene3D - 428 521 IPR020751 -
Spst4g01145 559 PANTHER GLUTAMATE--TRNA LIGASE 40 539 - -
Spst4g01145 559 FunFam Glutamate--tRNA ligase chloroplastic/mitochondrial 429 522 - -
Spst4g01145 559 SUPERFAMILY Nucleotidylyl transferase 47 355 - -
Spst4g01145 559 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 356 516 IPR008925 GO:0000049
Spst4g01145 559 Gene3D HUPs 39 371 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01145 Spst-Chr4 44727654 44735346 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01145 K01885 - gmx:100810730 1049.27