Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01100 ATGGAGCAAGAATCAAGGCAATTCCGTGGAGGAGTAGAAATTAGAGGAGTAACATATCGTGGATTTCATGGAACATCCCTTGATGGCAGAGCTATTATCCTAAATTGTGGAGAATCAGGTTGCTACGACATCGTATTGGATCAAATTAACATTGCCTCTTCTTTACCAACAAAACCAGCTTATTGTTCCTGCGTTAATGCCCATGGAACTGTTACATCTACTTTTGGTGCTAAGGGAGATGGAGAAACAGATGATTCACAAGCATTTTTAAGAGCATGGCAAAGCATATGTGGAGCTCAAGGGAAGTCAACTCTAGTCATACCTCCAAACTATGTCTTCTTGTTGTTTCCCTTCACCTTAAAGGGTCCTTGCCAAGCCTCAAGTATCCAAATTCAGATTCGAGGAAAACTAGTTGCACCTGTGAAGAAAGCATGGGTATCTTATACTTCTACATGGATTTCGATGACAAATATAAATGGTCTCACAATCGATGGAAGTGGAGGATTAATCGATGGCAAGGGTTCTTCTTGGTGGCCATGCGAAAGCTGTCAACGACCATCGGTGATTAATTTCAATGCATGCAATGGTCTTACTGTTAATTACCTGAACATCATTAACAGTCCAAGAGCTCACATATGCGTCAATGATTGTGTTGGTGCCAAATTCTCTCGCATCAGTATTCGTTCTCCTGCTAACAGTCCCAACACTGATGGATTTGATGTCTCTGCCTCCAAAAATATCTGGATCAGAGATTCAATTATAGCATCTGGTGATGATTGTGTTGCCATCAGTGGTGGCTGCTCTTATGTCAATGTTACTGGGATTGCTTGTGGACCAGGCCATGGAATTAGCATTGGAAGCTTGGGTAAAAGCAATGATAATTCAGTGGAACAAGTTCATGTTCAAAATTGCAACTTCACAGACACAACAAATGGAGCCAGAATCAAGACATTTGCAGGTGGATCAGGTTATGCAAAAGGAATAACTTTTGAGAAAATTACATTGATACGTGCCCGAAACCCAATAATTATTGACCAATTCTACACTGATGATTATTCAAAGAGTGGAGTGGAAGTGAGTGGGATCACATACCGTGGATTTCAAGGAACATGTGTGTATGATAAAGCAATTACATTAAATTGTGGTCCACAAGGTTGTTTCGACATTGCATTGGATCAAATCGACATTGTCTCTGCTCTACCAGGAAAGGCGGTTTCTTGTTCTTGCAATAATGCCCATGGAAAAGCTACATCTACTTCTCCAAATTGTCCTTGCTTATTGGCATGA 1287 0.4079 MEQESRQFRGGVEIRGVTYRGFHGTSLDGRAIILNCGESGCYDIVLDQINIASSLPTKPAYCSCVNAHGTVTSTFGAKGDGETDDSQAFLRAWQSICGAQGKSTLVIPPNYVFLLFPFTLKGPCQASSIQIQIRGKLVAPVKKAWVSYTSTWISMTNINGLTIDGSGGLIDGKGSSWWPCESCQRPSVINFNACNGLTVNYLNIINSPRAHICVNDCVGAKFSRISIRSPANSPNTDGFDVSASKNIWIRDSIIASGDDCVAISGGCSYVNVTGIACGPGHGISIGSLGKSNDNSVEQVHVQNCNFTDTTNGARIKTFAGGSGYAKGITFEKITLIRARNPIIIDQFYTDDYSKSGVEVSGITYRGFQGTCVYDKAITLNCGPQGCFDIALDQIDIVSALPGKAVSCSCNNAHGKATSTSPNCPCLLA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01100 428 Gene3D - 73 424 IPR012334 -
Spst4g01100 428 Pfam Glycosyl hydrolases family 28 97 415 IPR000743 GO:0004650|GO:0005975
Spst4g01100 428 ProSitePatterns Polygalacturonase active site. 274 287 IPR000743 GO:0004650|GO:0005975
Spst4g01100 428 PANTHER - 73 414 - -
Spst4g01100 428 Gene3D - 2 72 IPR012334 -
Spst4g01100 428 SUPERFAMILY Pectin lyase-like 74 426 IPR011050 -
Spst4g01100 428 SUPERFAMILY Pectin lyase-like 9 73 IPR011050 -
Spst4g01100 428 SMART pbh1 325 346 IPR006626 -
Spst4g01100 428 SMART pbh1 354 376 IPR006626 -
Spst4g01100 428 SMART pbh1 217 243 IPR006626 -
Spst4g01100 428 SMART pbh1 244 265 IPR006626 -
Spst4g01100 428 SMART pbh1 267 287 IPR006626 -
Spst4g01100 428 SMART pbh1 296 317 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01100 Spst-Chr4 43840977 43848864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01100 11 80 Glycoside Hydrolase AT5G17200 39.437 3.06e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01100 K01184 - gmx:100801217 512.301