Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01098 ATGAAGAACAAATACCCAGATAAAATCATAAATAAAAATGCTTTTATGAGTGCATGGCAAAAGACATGTGAAACAGCAGGGACAAACACCCTAGTTATTCCACGAACAGGAACATTCTTATTGAAGAAGAGCACAATCCTGAAGGGTCCTTGCATGGCCACAAGTATTCTTATTGAGCTTCAAGGTAAAATAATTGCACCGCCACAGAATGCATGGCAAGGTGGTTCTTCGATGATTTTGGTCACAAACATAAATGGTCTCACAATCAATGGAAATGGAGGATTAATCGATGGCGACGGATCTACTTGGTGGCCATGCGGCAAAAATTGTACACGACCATCGGTGATTAGTTTCAATGCATGCAATGGTCTTACTGTTAATTACTTGAGCATCACAAACAGTCCAAAAGCTCACATAACCATAAATGGTTGTGTGGGTGCAACATTCTCACATATTAACATTCAAGCTCCTGGTGATAGTCCTAACACTGATGGAATTGACATTTCTTCTTCCAAAAATATCTTGATCAAAGATTCCAATATTGCATCGGGTGATGATTGTATTGCAATCATTGGTGACTCCTCTTACATCAATGCCACTGGAATTGCTTGTGGACCAGGCCATGGAATAAGCATTGGAAGCCTGGGTAAAAACAATGGTCATGACAACGTGGAACAAGTTCATGTATACAATTGCAGCTTCACAAACACTAAGAATGGAGCAAGAATCAAGACATTTCAGGGTGGACCAGTAGGAGTCCAAGTGAGTGAGGTTACATTTCGAGAGTTCCAAGGAACATCTACAGATGACAGAGCAATTACCTTCGCTTGTGGTCCACAAGGTTGTCTCAACATTGTGTTGGATCACGTCAGCATCACATCTTCTTCAGGAAAACCAGCTTCTTGTTCTTGCACTAATGCCCATGGAACAGGACATAATTATAATGTGTTAGACTTTGGTGCTAAGGGTGATGGCAAAACGGATGATTCACAAGCATTTATACAAGCATGGCAAAGCACTTGTGGAGCACAAGGAGTGGCAACTTTGCTTATTCCTCAAAATTATGTCTTCTTGTTGACACCCATATTGCTAAAAGGTCCTTGCTATGCATCTACTCAAATTCAGATTCGGGGAAAAGTAGTTGCAGCTGAGATGAATGCATGGCCAACTTATAAGTCTGCTTGGATTATGATCTCAAATGTAAATGGTCTCACAGTGGATGGAAGTGGAGGATTGATCGATGGCTACGGTTCTTCCTGGTGGTCATGTGGAGACTGTCAACGACCATCGGCTATTACTTTTAATTCATGCAATGATCTTAGTGTTAGTTACCTGAGCATAGTTAACAGTCCAAAAGCTCACATGCATATACACAGTTGTGTGGGTGCCACATTCTCTAGTATCAGTATTCAATCTCCTGCTGATACTCACAACACTGATGGAATGGATGTTTATGCTTCAAAAAATATCTGGATCAGAGATTCAACTATAGCATGTGGTGATGATTGTATTGCTATCAGTGGTGGCTCCTCTTATGTCAATGTTTCTGGGATTGCTTGTGGACCAGGCCATGGAATTAGCATTGGCAGCCTGGGAAGAGGCAATGGTAATACAGTGGAAGAAGTTCATGTCCAAAATTGCAATTTCACAAACACAAAAAATGGAGCAAGAATCAAGACATTTTCTGATGGATCAGGTTATGCAAGAGGAATAACTTTTGAGGAAATTACACTGAACCAAGTTCGCAATCCAATAATTATTGACCAATTCTACCATAACAGTAACTCAAGGAATGGAGGAGTGGAAGTGAGCGGAATCACATATCGTGGATTTCAAGGAACATGTGTGAATGGTGCAGCAATCACCTTGGATTGTGGGCCACAAGGTTGTACGAACATTATGTTGGATGGAAACGCCATTGTCTCTACTGAACCAGGAAAACCAGCTACTTGTTCTTGCAACAATGCCCATGGAACAGCTTCATCCACTGTTCCAGATTGTTCTTGCTTATTGCCATGA 2019 0.4116 MKNKYPDKIINKNAFMSAWQKTCETAGTNTLVIPRTGTFLLKKSTILKGPCMATSILIELQGKIIAPPQNAWQGGSSMILVTNINGLTINGNGGLIDGDGSTWWPCGKNCTRPSVISFNACNGLTVNYLSITNSPKAHITINGCVGATFSHINIQAPGDSPNTDGIDISSSKNILIKDSNIASGDDCIAIIGDSSYINATGIACGPGHGISIGSLGKNNGHDNVEQVHVYNCSFTNTKNGARIKTFQGGPVGVQVSEVTFREFQGTSTDDRAITFACGPQGCLNIVLDHVSITSSSGKPASCSCTNAHGTGHNYNVLDFGAKGDGKTDDSQAFIQAWQSTCGAQGVATLLIPQNYVFLLTPILLKGPCYASTQIQIRGKVVAAEMNAWPTYKSAWIMISNVNGLTVDGSGGLIDGYGSSWWSCGDCQRPSAITFNSCNDLSVSYLSIVNSPKAHMHIHSCVGATFSSISIQSPADTHNTDGMDVYASKNIWIRDSTIACGDDCIAISGGSSYVNVSGIACGPGHGISIGSLGRGNGNTVEEVHVQNCNFTNTKNGARIKTFSDGSGYARGITFEEITLNQVRNPIIIDQFYHNSNSRNGGVEVSGITYRGFQGTCVNGAAITLDCGPQGCTNIMLDGNAIVSTEPGKPATCSCNNAHGTASSTVPDCSCLLP 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01098 672 Pfam Glycosyl hydrolases family 28 23 248 IPR000743 GO:0004650|GO:0005975
Spst4g01098 672 Pfam Glycosyl hydrolases family 28 341 661 IPR000743 GO:0004650|GO:0005975
Spst4g01098 672 Pfam Glycosyl hydrolases family 28 251 308 IPR000743 GO:0004650|GO:0005975
Spst4g01098 672 Gene3D - 251 310 IPR012334 -
Spst4g01098 672 SMART pbh1 598 625 IPR006626 -
Spst4g01098 672 SMART pbh1 539 560 IPR006626 -
Spst4g01098 672 SMART pbh1 460 486 IPR006626 -
Spst4g01098 672 SMART pbh1 510 530 IPR006626 -
Spst4g01098 672 SMART pbh1 144 170 IPR006626 -
Spst4g01098 672 SMART pbh1 568 589 IPR006626 -
Spst4g01098 672 SMART pbh1 224 245 IPR006626 -
Spst4g01098 672 SMART pbh1 487 508 IPR006626 -
Spst4g01098 672 SMART pbh1 171 192 IPR006626 -
Spst4g01098 672 Gene3D - 311 668 IPR012334 -
Spst4g01098 672 PANTHER - 314 658 - -
Spst4g01098 672 ProSitePatterns Polygalacturonase active site. 517 530 IPR000743 GO:0004650|GO:0005975
Spst4g01098 672 SUPERFAMILY Pectin lyase-like 313 670 IPR011050 -
Spst4g01098 672 Gene3D - 8 250 IPR012334 -
Spst4g01098 672 SUPERFAMILY Pectin lyase-like 11 312 IPR011050 -
Spst4g01098 672 ProSitePatterns Polygalacturonase active site. 201 214 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01098 Spst-Chr4 43825038 43837819 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01098 298 667 Glycoside Hydrolase AT5G17200 41.457 1.53e-93 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01098 K01184 - mtr:25500200 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01098 4 43825038 43837819 Spst4g01098 4 43825038 43837819 ECH