Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01082 ATGAAGGGTGGTGTGAAGAGAAAGGCTACCTTGGATGCTCCGGGCGAGGTGGTTGAGCCTTTTGGTGCTGCGGATTCGGGAGGTGGAGACTGTGGGGGCTTGAAAGTTCAAAGCTTTGAGGGGAACGAGCGTACCCAGTTGCAGAACGGTGAGGTTGAGGAACCCCGTCTGGAGGATTCTGAAGGGGAGGGTGAGGAAGGAGGGGAAGAAGAAGAGTATGGTGCTGAGGGAGATGAAGAAGAGGAAAATGTTGGTGGTGCTTTTCCAGGGGCTCAAGGCGTCGTTCTTGCTGAAAATTTTTATGAAGTTGAAGCTATACGTCGGAAGAGGGTGCGCAAGGGGCAGGTGCAATACTTTATCAAATGGATTGGGTGGCCTGAGACAGCCAACACTTGGGAGCCACCAGAAAATCTAGTTTCTGTTCCTGATGTTGTTGAAGCTTTTGAGGAGAGCCTGAGGTCAGGAAAGCATCGTAAGCGCAAACGCAAGCATGTGGTGCATCATACACAACCCAGGAAGAGGCTGGAGCGATCTACAACTCCATACAGCCTTCGACGTTTTTCGACAAGTACCGCTGAGAACCATATACAGTCTGCTCCTCCTGTTCTTAATGATGCTAGCCTTCCTGTTATTCCTGCCTTTCCTCAGACTGTTCTTTTTGCTGATGAAGTGGGAAATGGTGCTGGCAGCCGTCTTGGAAATGCCACACCTGGTAATGTTAACAAGTCTGCAATTGGTTCAGAACAAAATATTGAAAATAATGAGGAAAATGATTATGATCCTAAGCTTAGTGAGCTTAAAGCTTCTTCTGCCGGTGTGAATGATGCAGACAGGCTTTCAATAAGGATTCCAGAAGCTAGGGTTCCTTCTGGTTCTGGGTTTGCTGGCAATAATAATGGTCACGCAGTTGCTAAATCAAAGGGGGTTCGCATGGAAATAAGTGAGAGTGGCCGCTGCCGGGGAGCCAAAAGGAGAAAATCTGGTTCTGTAAGGAGGTTCAACAAAGAATTATATGCTGGTGAGCCTGTCAATGCACAAAATCCAATTGGTGCACCTGTTGGTGCAGCTGAGGCAGCACTAACAAGGAATGCTGGTAATGGTCCTAATTCGAATCATTCCAGACCTGCTAGCAATATTGTGAAGATTATAAAGCCAGTAGGCTATTCAGCTTCAGTAGCCAGTGGAGCGCAGGATGTTTTGGTGACCTTCGTTGCATCAAAGTCTGATGGAACAGAAGTGATGGTTAACAATAAGTATCTAAAAGCATTTAATCCACTTCTTCTCATCAATTTCTATGAACAGCATCTTCGCTACAGCCCTACATCTTGA 1329 0.4688 MKGGVKRKATLDAPGEVVEPFGAADSGGGDCGGLKVQSFEGNERTQLQNGEVEEPRLEDSEGEGEEGGEEEEYGAEGDEEEENVGGAFPGAQGVVLAENFYEVEAIRRKRVRKGQVQYFIKWIGWPETANTWEPPENLVSVPDVVEAFEESLRSGKHRKRKRKHVVHHTQPRKRLERSTTPYSLRRFSTSTAENHIQSAPPVLNDASLPVIPAFPQTVLFADEVGNGAGSRLGNATPGNVNKSAIGSEQNIENNEENDYDPKLSELKASSAGVNDADRLSIRIPEARVPSGSGFAGNNNGHAVAKSKGVRMEISESGRCRGAKRRKSGSVRRFNKELYAGEPVNAQNPIGAPVGAAEAALTRNAGNGPNSNHSRPASNIVKIIKPVGYSASVASGAQDVLVTFVASKSDGTEVMVNNKYLKAFNPLLLINFYEQHLRYSPTS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01082 442 ProSitePatterns Chromo domain signature. 118 138 IPR023779 -
Spst4g01082 442 ProSiteProfiles Chromo and chromo shadow domain profile. 101 160 IPR000953 -
Spst4g01082 442 MobiDBLite consensus disorder prediction 232 252 - -
Spst4g01082 442 CDD CD_CSD 101 150 - -
Spst4g01082 442 Pfam Chromo (CHRromatin Organisation MOdifier) domain 101 150 IPR023780 -
Spst4g01082 442 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 23 441 IPR044251 GO:0006325|GO:0031507
Spst4g01082 442 Gene3D - 65 152 - -
Spst4g01082 442 SUPERFAMILY Chromo domain-like 93 157 IPR016197 -
Spst4g01082 442 MobiDBLite consensus disorder prediction 56 83 - -
Spst4g01082 442 MobiDBLite consensus disorder prediction 231 259 - -
Spst4g01082 442 SMART chromo_7 100 153 IPR000953 -
Spst4g01082 442 MobiDBLite consensus disorder prediction 152 179 - -
Spst4g01082 442 SMART ChS_2 366 441 IPR008251 GO:0005634
Spst4g01082 442 MobiDBLite consensus disorder prediction 1 89 - -
Spst4g01082 442 MobiDBLite consensus disorder prediction 155 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01082 Spst-Chr4 43556658 43565843 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01082 - - gmx:100782342 562.377