Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00913 ATGTTGACAAAGCAAGTGGTGCCTCTGCCACCCCAGAAATTGTCCCTCTCCTGTTCCCCTTTAAATGTTACAAAAATCCCATCTTTTGTGAATTTAAAAAATGGGTATGGTCATAGTTGTAGCATAGTCAATGCAATAACTTTGGATGAACTTCCCCCAAACGCGATTCGGAGGAAGAGAGAGCCGCAATGGAGAGGAGGGTTCAGCCTTGGACTCGACTTGGGATTGGCTCGCACTGGCCTTGCTCTCAGCAAAGGCTTCTCTATTCGACCTTTAACCGTTTTGGAACTCCGAGGACAGAAGCTTGAGGTTCAGATTATTAACATTGCCGAACAAGAGGAGGTTGACGAGTTTATAATTGGGCTTCCAAAATCTGCTGATGGAAAGGAAACACCACAGTCGAACAAAGTTCGAAGTGTTGCTGGAAGGCTTGCTGTTCAAGCTGCTGAGAGGGGTTGGAGAGTATATCTACAAGATGAACATGGGACAACATCAGACGCCATAGATAGAATGATTAACATGGGTTTAAGTAAGTCGTCTCAGAAAAAGAAACTCGATGCTTATGCTGCCATGATGGTGCTGGAGAGATATTTCTCCACTTCAGGTCAGAGTACTGAACTTGTTCTGCCAAAAAATCTAGAATTACAAGCAAAACTTCAAAGGGGTCCTCCCAAAGATGTTGATTTCTTCTCGGATGAAGATTAA 705 0.4383 MLTKQVVPLPPQKLSLSCSPLNVTKIPSFVNLKNGYGHSCSIVNAITLDELPPNAIRRKREPQWRGGFSLGLDLGLARTGLALSKGFSIRPLTVLELRGQKLEVQIINIAEQEEVDEFIIGLPKSADGKETPQSNKVRSVAGRLAVQAAERGWRVYLQDEHGTTSDAIDRMINMGLSKSSQKKKLDAYAAMMVLERYFSTSGQSTELVLPKNLELQAKLQRGPPKDVDFFSDED 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00913 234 Hamap Putative pre-16S rRNA nuclease [yqgF]. 67 202 IPR005227 GO:0006364
Spst4g00913 234 CDD YqgF 70 198 IPR005227 GO:0006364
Spst4g00913 234 Gene3D - 69 207 IPR037027 GO:0006139
Spst4g00913 234 Pfam Holliday junction resolvase 69 199 IPR005227 GO:0006364
Spst4g00913 234 SMART rnase_8s 67 167 IPR006641 GO:0006139
Spst4g00913 234 NCBIfam Holliday junction resolvase RuvX 70 198 IPR005227 GO:0006364
Spst4g00913 234 SUPERFAMILY Ribonuclease H-like 68 200 IPR012337 -
Spst4g00913 234 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 44 218 IPR005227 GO:0006364
Spst4g00913 234 FunFam Holliday junction resolvase 69 206 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00913 - - gmx:100810356 389.037