Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00823 ATGGTGAAAGTGGTATTTGGGGAAAATGAAACCTGTTATTATTACTTGTCACTTGATAAGCAGCTCAGTGGCTCCAGTGTCATACAACCTGGGCAGCAACATTTGTCACTGCAGCTTCAACAGAGGCGTGAAAATGCCTTGGATGATCGTCATAAAGCTTCTGTTGGTTCATCTACTGATGTAAAACCACTGTTATCTTCTCTAGGGCAATCTTCAGTACTAACACCTATTGATGCTCCTAGTACCAATAAGTTACATAGCTCAGTCAGCACCCCGTCAATGCTATCTTCTTCTTCTCCTGGTTTTGTTCGCCCTTCCCGTGCAGCTCCTTCTACCAGGTTTGGATCTGCCTTGAACATTGAAACTTTGGTTGCTGCTGCTGAGAAAAGAGAAATTCCTATTGAGGCTCCAGGGTCAGAGGTTCAGGACAAGATATTATTTATAATTAATAATGTTTCTGCTGCTAATATTGAAGCTAAAGCAAAAGAGTTCACTGAAATTTTGAAAGAGCAGTACTATCCTTGGTTTGCACAGTATATGGTTATGAAAAGTGCAGCAGGGAAGCTTATATGGACTATTGGGGTTAATAAAGAAATTGAAAGAGTAGTAGGGAGGTTTAAATGGGCTGTTGGGGGGTTAATAGTAGCAAGCATTGAGCCAAATTTCCATGACCTGTACCTGAAATTCCTGGATAAAGTTAATTCGAAGGTTTTGAACAAAGAGATTGTTCAGGCAACTTATGAAAATTGCAAGGTTCTTTTAGGATCAGAACTCATAAAATCAAGTTCAGAGGAACGCTCTTTGCTTAAAAATTTGGGTAGCTGGCTCGGAAAGTTAACAATTGGCCGGAATCAGGTTTTGAGGGCTCGTGAAATAGACCCAAAGTCCTTGATTATGGAGGCATATGAGAAGGGGCTAATGATTGCTGTCATTCCATTTACATCAAAGGTCCTTGAACCATGCCAAAGTAGTCTTGCTTACCAACCTCCTAATCCTTGGACTATGGGCATTTTGGGATTGCTTGTTGAGATTTATTCAATGCCAAACTTGAAAATGAACCTCAAGTTTGACATAGAGGTGTTATTTAAAAATCTTGGTGTTGATTTGAAGGATGTCACACCAACATCTCTTCTGAAGGATAGAAAAAGAGAATTTGAAGGAAATCCTGATTTCTCTAATAAAGATGTTGGAGCATCTCAATCACAACTTATTACTGATATAAAATCTGGTCTTGTACCTCCTGTAAATCAAGTAGAATTACCACTTGAAGTCACCAATCCATCCAATACGGGGGCTCATCCACATATGCTGTCTCAGTATGCTGGTCCTCTTCATATGTCCTCGGGTGCATTGATGGAAGATGAAAAGGTAGCACCTCTGGGACTGTCTGATCAACTTCCCTCTGCCCAAGGACTGTTACAAGCAACTCCTTCCCCAGCAGCACCTTTTTCTATTAGCCAGCTTCCTACACCGATACCTAATATTGGGACTCATGTTATTATTAATCAAAAGCTCAGTGGTTTTGGTTTGCAAATGCATTTTCAGAGAGCGGTACCCATTGCAATGGATAGAGCTATCAAAGAGATAGTGTCTAGTATCGTGCAGCGTAGTGTTTCCATAGCAACACAAACAACGAAGGAACTTGTTTTAAAGGATTATGCCATGGAATCTGACGAGACACGCATATTAAATGCAGCACACTTAATGGTCGCTAGTCTGGCTGGGAGTTTGGCTCATGTTACATGCAAAGAACCCTTAAGGGCATCAATATCTGGTCAACTGAGGACTTCACTTCAGAACTTAAATATTGCTAATGAAATTTTGGAACAAGCTGTGCAACTTGTCACCAATGATAATCTTGATCTAGGTTGTGCAGTCATTGAACAGGCAGCTACTGATAAGGCAATAAACACCATTGATACAGAGATTGGTCAACAACTTTCTTTGAGAAGGAAGCATCGAGAAGGTATGGGGTCTACATTTTTTGATGCAAATTTGTATCCACAAGGTTCAATGGGTGGTGTTCCCGAGCCTCTTCGTCCCAAGCCTGGACAGTTGTCCCTTTCACAACAGCGTGTCTATGAGGACTTTGTTCGGCTTCCCTGGCAAAACCAGTCTAGCCAGAGCTCACATTCTATGTCTGCTGGGGTTTCTGTTCAATCTGGCAATACTGGTCTTCCTAGCACCAATGGTTCTCTATCAGGTCAGGTTAACTCTGGTTACCCTGTGAGCACAGGATATGAAGGAGTATCCCGACCATTAGAAGATATGACGGAGTCTAGTTTGGCTCCACATTTTAGTGGTTCCTCTATTCACCTTAGAGCATCATCTGATAGTGTTTCCCAGCATAGTTTGGAGAAAGAGTCTGTTGCTTCATTTCCTTCAGCTGCTTCAACCCCTGAATTGCATGCTGTGGATTCAGCTGAAGTGAAAGAATCTGGAACTTCTTCACAGCCACTAGTTACATCAGGTGCTGTAGAGCGCCTTGGAAGTAGTTTCTTGGAGCCTTCTCTTTCTACTAGAGATGCCCTAGATAAGTTCCAAATTGTTGCACAAAAGAAGTGTCGTAAAAGAATATTTGAAACAGGACCACCCATTGTGCCATGGTTGGAAGCTATGGTCAGCAATGATTCCAGAGATGCAGAAATACAGGGTGTCGTTTCTGAGGTCCCTGAGATCATACTTAGATGTGTTAGTCGAGATGAGGCAGCTTTAGCTGTGGCTCAAAAGGTTTTCAAGGGTTTGTATGATAATGCATCAAACAACATCCATGTTTCTGCTCATCTTTCAATCCTGACTGCCATTCGTGATGTTTGCAAGCTTGCGGTGAAGGAGCTGACTAGTTGGGTAATTTATTCGGAAGAAGAAAGGAAATATAACAAAGAAATTACTGTTGGCCTCATCCGTAGTGAATTGCTAAATCTTACTGAGTACAATGTTCATATGGCAAAACTTATTGATGGAGGAAGGAACAAGGCTGCAACGGAATTTTGCATTTCCCTTCTTCAAACCCTGGTTATCGAGGAACCCAAAGTTATTTCAGAACTTCACAATCTTGTTGATGCTTTGTCAAAGCTTGCTACTAAGCCTGGATGCCCTGAACCATTACCACAGCTTCTTGAAATGATCAAGAATCCTGGTTCTCTATCCTCTAGCAATGCTGGAAAGGAGGATAAGGCAAGACAATCAAGAGACATTAAGGGTCCTGGAATGCTACCTGCAAACAGAGAAGAGTTCAACAGTGTGGATTCTATTGAACCAGATCCTGCTGGGTTCCGGGAGCAGGTTTCCATTTTGTTTACAGAATGGTATAGGATATGTGAACTTCCTGGTGCCAACGATACAGCCTCTGCCCACTTCATCTTACAATTGCATCAGAATGGGTTGCTGAAGGGGGATGATCTGACAGATCGATTTTTCCGACTATTACTGGTTGCTTATCTTTTCTTCATGCTGGAGCTTGCTGTTGCGCATTGCTTATCCACTGAGATGATTAATTCAGGGTCACTGCAATCCCAACAGCCGCAGGCAATGTCATTTCTTGCAATTGATATTTATGCAAAGCTTGTCTTCTCAATCTTGAAGGGATCAAACAAACCCTTTCTTCTTTCCAAGATTCTGGCAGTTGCTGTTAGATTCATTATAAAAGATGCTGAGGAGAAGAAGGCATCTTTTAATCCTAGACCACTTTTCAGATTATTCATCAACTGGCTTCTAGATCTTGGTTCTCTTGAGCCTGTTACTGATGGTGCAAATCTCCAGATTTTGACTGCCTTTGCCAATGCATTTCATGCATTGCAACCGCTGAAAGTTCCTGCATTCAGGTCAGGAATGCCTTCGTGTGATTCATTGTTGGCTGTATTTTGGTTTGAGTTTAAGGATAATGGTGTAATGGCATACTACTTTATTGAGATGTTGACTTGTCAACTGTTTGTCATGGTATGGAGTTTTGCATGGCTTGAGCTGGTTAGTCACAGGAGCTTCATGCCTAAAATGTTGACTGGTAATGGTCAAAAAGGTTGGCCTTATATCCAAAGGTTGCTTGTAGACCTGTTCCAATTTATGGAGCCTTTTCTGAGGCATGCTGAACTTGGAGACCCAGTTCGTGTCCTCTACAAAGGAACACTTAGAGTGCTCTTAGTGCTACTTCATGACTTCCCGGAGTTTCTATGTGACTATCACTTTACCTTTTGTGACGTTATTCCCCCAAGTTGCATACAGATGAGGAATATCATTCTAAGTGCATTTCCGCGTAGTATGAGGCTGCCCGATCCATCTACTCCCAATCTGAAGATTGATTTACTTCAAGAAATAACCCAATCACCCCGCATTCTTTCTGAGGTTGATGCTGCGCTTAAAGCAAAGCAGATGAAGGCTGATGTAGATGAATACCTTAAGACAAGGCAACAGAGTTCTCCATTTTTATCTGAACTTAAGGATAAGATGCTTCTCTCACCCAATGAAGCTGCCTCTGCTGGGACTCGATACAATGTGCCGTTAATCAACTCACTTGTGCTATATGTTGGAATGCAGGCAATCCATCAGCTTCAGGGACGTACTCCCCATACGCAATCTTCAGCTAATGCATTCCCCTTAGCCGTATTTTCTGTTGGTGCTGCATTGGATATTTTCCAGACACTCATTGTAGATCTAGACACTGAAGGACGATATCTTTTCCTAAATGCTATTGCCAACCAACTGCGTTATCCTAATACCAATACACACTACTTTTCCTTCATCCTTCTTTACTTGTTTGCTGAATCAAACCAGGAAGTTATCCAAGAACAAATTACTAGAGTCTTGTTAGAACGCCTAATTGTTAACCGTCCTCATCCCTGGGGCCTCCTCATTACCTTCATTGAACTTATCAAGAATCCTAGGTATAACTTCTGGAACCGGAGTTTCATCAGATGTGCGCCGGAGATCGAAAAGCTTTTTGAATCCGTGTCAAGATCTTGTGGAGGTCCAAAACCAGTGGATGATAGCATGGTGGTGTCCGGTTGGGTCTGA 5010 0.4208 MVKVVFGENETCYYYLSLDKQLSGSSVIQPGQQHLSLQLQQRRENALDDRHKASVGSSTDVKPLLSSLGQSSVLTPIDAPSTNKLHSSVSTPSMLSSSSPGFVRPSRAAPSTRFGSALNIETLVAAAEKREIPIEAPGSEVQDKILFIINNVSAANIEAKAKEFTEILKEQYYPWFAQYMVMKSAAGKLIWTIGVNKEIERVVGRFKWAVGGLIVASIEPNFHDLYLKFLDKVNSKVLNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGLLVEIYSMPNLKMNLKFDIEVLFKNLGVDLKDVTPTSLLKDRKREFEGNPDFSNKDVGASQSQLITDIKSGLVPPVNQVELPLEVTNPSNTGAHPHMLSQYAGPLHMSSGALMEDEKVAPLGLSDQLPSAQGLLQATPSPAAPFSISQLPTPIPNIGTHVIINQKLSGFGLQMHFQRAVPIAMDRAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRILNAAHLMVASLAGSLAHVTCKEPLRASISGQLRTSLQNLNIANEILEQAVQLVTNDNLDLGCAVIEQAATDKAINTIDTEIGQQLSLRRKHREGMGSTFFDANLYPQGSMGGVPEPLRPKPGQLSLSQQRVYEDFVRLPWQNQSSQSSHSMSAGVSVQSGNTGLPSTNGSLSGQVNSGYPVSTGYEGVSRPLEDMTESSLAPHFSGSSIHLRASSDSVSQHSLEKESVASFPSAASTPELHAVDSAEVKESGTSSQPLVTSGAVERLGSSFLEPSLSTRDALDKFQIVAQKKCRKRIFETGPPIVPWLEAMVSNDSRDAEIQGVVSEVPEIILRCVSRDEAALAVAQKVFKGLYDNASNNIHVSAHLSILTAIRDVCKLAVKELTSWVIYSEEERKYNKEITVGLIRSELLNLTEYNVHMAKLIDGGRNKAATEFCISLLQTLVIEEPKVISELHNLVDALSKLATKPGCPEPLPQLLEMIKNPGSLSSSNAGKEDKARQSRDIKGPGMLPANREEFNSVDSIEPDPAGFREQVSILFTEWYRICELPGANDTASAHFILQLHQNGLLKGDDLTDRFFRLLLVAYLFFMLELAVAHCLSTEMINSGSLQSQQPQAMSFLAIDIYAKLVFSILKGSNKPFLLSKILAVAVRFIIKDAEEKKASFNPRPLFRLFINWLLDLGSLEPVTDGANLQILTAFANAFHALQPLKVPAFRSGMPSCDSLLAVFWFEFKDNGVMAYYFIEMLTCQLFVMVWSFAWLELVSHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFMEPFLRHAELGDPVRVLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPDPSTPNLKIDLLQEITQSPRILSEVDAALKAKQMKADVDEYLKTRQQSSPFLSELKDKMLLSPNEAASAGTRYNVPLINSLVLYVGMQAIHQLQGRTPHTQSSANAFPLAVFSVGAALDIFQTLIVDLDTEGRYLFLNAIANQLRYPNTNTHYFSFILLYLFAESNQEVIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVSRSCGGPKPVDDSMVVSGWV 1669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00823 1669 Gene3D - 106 386 - -
Spst4g00823 1669 MobiDBLite consensus disorder prediction 705 751 - -
Spst4g00823 1669 Pfam CCR4-Not complex component, Not1 1314 1649 IPR007196 -
Spst4g00823 1669 FunFam Ccr4-Not transcription complex subunit 208 386 - -
Spst4g00823 1669 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 1314 1657 IPR040398 GO:0017148|GO:0030015
Spst4g00823 1669 MobiDBLite consensus disorder prediction 777 798 - -
Spst4g00823 1669 MobiDBLite consensus disorder prediction 777 796 - -
Spst4g00823 1669 MobiDBLite consensus disorder prediction 79 108 - -
Spst4g00823 1669 MobiDBLite consensus disorder prediction 705 745 - -
Spst4g00823 1669 Gene3D - 1423 1654 - -
Spst4g00823 1669 Gene3D - 1305 1422 - -
Spst4g00823 1669 Gene3D - 1081 1277 - -
Spst4g00823 1669 MobiDBLite consensus disorder prediction 79 105 - -
Spst4g00823 1669 MobiDBLite consensus disorder prediction 1047 1084 - -
Spst4g00823 1669 FunFam CCR4-NOT transcription complex subunit 1 1419 1648 - -
Spst4g00823 1669 Coils Coil 598 618 - -
Spst4g00823 1669 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 134 185 IPR032191 -
Spst4g00823 1669 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 216 384 IPR032191 -
Spst4g00823 1669 MobiDBLite consensus disorder prediction 44 63 - -
Spst4g00823 1669 Pfam CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 512 654 IPR024557 -
Spst4g00823 1669 CDD NOT1_connector 837 1044 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00823 K12604 - gmx:100803794 2789.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00823 4 35835606 35848487 Spst4g00823 4 35835606 35848487 ECH