Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00820 ATGGGGAAAATCCCTCCTTCGTTCCGCTCCGCAATCGGAAACCCTAACATTCGAAACCCTTCTTCTCTCTTCCGTCCCCAACCACCTTCTTCTCCCTGCAAACCATTCCCCTCCCAGAAGAAACAATCCCGAAAGCCTATTCCACAACAAAAACCTATCTTCAAATCCCCAAATCTCGAAGACGCCAAGAAAACCTTCGACTCCATTGCCAATTCCTCCCATGACCCTCGCTTCCCCAATTCCCTCCTTCACTCCTACGCCAAAATCGCCACCTCCACCACCGATTCCATCAAATTCCTCCACCACATCACCAAAACCCTCCCTTCCTTCTCCCCCGACCGTTCCACCTTCCACATTCTCCTTTCCCACTCCTGCACCAATCCCAATTCCAATTCCGCTCTCTCCCCAATCCACCAAACCCTAAATTCAATGCTCGCCGCCGGCTTCAACCCGGATGCAGCCACAGCCGACGTTGCGGTCCGCGCCTTGTGCTCCGCCGCCTGCCTTGACCACGCCGTTGAATTGATCAAAGAATTCGCCTCCAAACACTGCCCCCCGGACACCTACACCTTCAATTTCCTCGTTAAGCATCTCTGCAAAGCTCGCGCATTGTCCACTGTCTACGCCTTCATCGACGAAATGCGCGAAAAATTCGGTGTAAAGCCTGATCTTGTTACCTACACTATCTTGATTGACAATGTGTGTAATGGTAAGAACTTGAGAGAGGCAATGAGGTTGGTGAGTGTGCTCCATGAGGAAGGGTTCAAGCCTGATTGCTTTGTGTATAACACGATTATGAAAGGGTATTGTGTGTTGAGTAGAGGGAGTGAGGCGATTGAAGTTTATAACAAAATGAAGGAGGAAGGGGTGGAGCCTGATCTTGTTACTTACAACACTTTGATTTTTGGGTTGTCCAAGTCGGGGAGGGTGGTGGAGGCGAAGAAGCTGTTGCGTGTAATGGCGGAGAAGGGGTATTTTCCTGATGAGGTGACTTATACTACATTGATGAATGGGATGTGTAGGAAGGGGGACGCGCTGGGGGCGCTGGCGTTGTTGGGGGAGATGGAGGCGAAGGGATGCAGCCCGAATGAGTGCACATATAACACTCTGCTGCACGGGTTGTGTAAGGCGAGGTTGTTGGAGAAGGCGGTTGACTTCTATGGGGTGATCAAGGAGGGTGGTTTGAAGCTTGATACGGCTTCTTATGGGACATTTGTGAGGGCACTGTGTAGAGATGGGAGAGTTGCCGAGGCTTATGAGGTGTTTGATTATGCGGTTGAGGGCAAGAGCTTGACTGATGTTGCTGCTTACTCGACGTTGGAGAGCACGCTTAAGTGGCTCAAGAAGGCCAAAGAACAAGGGCTTGCTGTTTGA 1374 0.5095 MGKIPPSFRSAIGNPNIRNPSSLFRPQPPSSPCKPFPSQKKQSRKPIPQQKPIFKSPNLEDAKKTFDSIANSSHDPRFPNSLLHSYAKIATSTTDSIKFLHHITKTLPSFSPDRSTFHILLSHSCTNPNSNSALSPIHQTLNSMLAAGFNPDAATADVAVRALCSAACLDHAVELIKEFASKHCPPDTYTFNFLVKHLCKARALSTVYAFIDEMREKFGVKPDLVTYTILIDNVCNGKNLREAMRLVSVLHEEGFKPDCFVYNTIMKGYCVLSRGSEAIEVYNKMKEEGVEPDLVTYNTLIFGLSKSGRVVEAKKLLRVMAEKGYFPDEVTYTTLMNGMCRKGDALGALALLGEMEAKGCSPNECTYNTLLHGLCKARLLEKAVDFYGVIKEGGLKLDTASYGTFVRALCRDGRVAEAYEVFDYAVEGKSLTDVAAYSTLESTLKWLKKAKEQGLAV 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00820 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Spst4g00820 457 NCBIfam pentatricopeptide repeat 401 424 IPR002885 -
Spst4g00820 457 NCBIfam pentatricopeptide repeat 330 364 IPR002885 -
Spst4g00820 457 NCBIfam pentatricopeptide repeat 295 329 IPR002885 -
Spst4g00820 457 NCBIfam pentatricopeptide repeat 225 259 IPR002885 -
Spst4g00820 457 NCBIfam pentatricopeptide repeat 365 398 IPR002885 -
Spst4g00820 457 NCBIfam pentatricopeptide repeat 261 293 IPR002885 -
Spst4g00820 457 Gene3D Tetratricopeptide repeat domain 53 250 IPR011990 GO:0005515
Spst4g00820 457 Gene3D Tetratricopeptide repeat domain 323 456 IPR011990 GO:0005515
Spst4g00820 457 PANTHER OS03G0856100 PROTEIN 148 440 - -
Spst4g00820 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Spst4g00820 457 Pfam PPR repeat 394 424 IPR002885 -
Spst4g00820 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Spst4g00820 457 Gene3D Tetratricopeptide repeat domain 251 322 IPR011990 GO:0005515
Spst4g00820 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Spst4g00820 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Spst4g00820 457 Pfam PPR repeat family 257 306 IPR002885 -
Spst4g00820 457 Pfam PPR repeat family 186 236 IPR002885 -
Spst4g00820 457 Pfam PPR repeat family 327 376 IPR002885 -
Spst4g00820 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Spst4g00820 457 MobiDBLite consensus disorder prediction 1 60 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00820 240 442 Glycosyltransferase AT1G05670 32.692 4.21e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00820 - - gmx:100782321 757.288