Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00818 ATGTTCCTTTCACTCACATACTCCTTCACGTTCTTCTTCACTCTCATCCTCACATCATTACCTTCACACGTTGCAACCTTCACACCACCAGCCACCAAAATATCCATCACAAGCCACCACATTCAAAGCCTCAGCAATGCTCAGAAAGGGACTAAAATCGCAGGTATATCGCAATTTAAACGATATCTACATCGTTTTGGGTACCTACAAAACAACAACAGCAGCATTTTTAGCGACGAATTTGATGTCGTGTTGGAATCGGCTCTCGTTAGATATCAAGGAAACCTTGGTCTCCAAGTAACTGGGAAGCTCGACACTAACACGGTTTCTCAAATGACCACACCAAGATGTGGTGATCCAGACACAAACACAACACCCCACGATCACAATCACCACCACAACCACGTCCACAACGTACATTCTTCAAAGAATTTCGTGTTTTTCCCCGGAAAACCACGTTGGTCACGTCCAATGCCAATGACACTCACCTATGCCTTCTCACGTGAGAACATGATCCATAGTTTGAGCATGAAGGAGATAAGAGAGGCATTTCAACGTGCATTCTTAAGATGGGCTTCGGTTATTCCAGTTAGCTTTGTTGAGGTGGGTGACTTTGAAGTTGCGGAGTTGAAAATAGGGTTTTACAATGGGGAGCATGGTGATGGTGAGCCTTTTGATGGGGTGCTTGGGGTGTTGGCCCACTCCTTCTCGCCGGAGATCGGCCGTCTCCACCTTGACGCAGCCGAGACGTGGGCGGTGGACTTCCAGGCCACCGCATCGGAGGCGGCGGTGGACTTGGAGTCGGTGGCCACACATGAGATTGGACACTTGTTAGGGTTGTCTCATAGTTCGGTGAAAGAGGCTGTTATGTATCCAAGTTTGAGGCCAAGAGACAAGAGGGCTAATTTGAACATCGATGACATAAAGGGGGTGCAATCTCTATATGGATCAAACCCTAATTTCAGATCCGAGTGGTCACTTGAATCTGATATGTCGGCAAATCAAGGTTCCAAGTTTTTGAAACCTTTGAGGGTCGAGTATGAAGAGTTTGTCGAGGAGAAAGGTGATTCATGGATTGGTCTTCAAGTGGCTAGGATGTGTGGAATGTTGATTCTCATAATAATTGTTAACCGAATCATCAATGACTTGAATGAGTGGAATGCTGATTTTCATATTGGAAAAGATGGTTGTGAAGAAATGGTGATATCATTGGTTTGA 1218 0.4557 MFLSLTYSFTFFFTLILTSLPSHVATFTPPATKISITSHHIQSLSNAQKGTKIAGISQFKRYLHRFGYLQNNNSSIFSDEFDVVLESALVRYQGNLGLQVTGKLDTNTVSQMTTPRCGDPDTNTTPHDHNHHHNHVHNVHSSKNFVFFPGKPRWSRPMPMTLTYAFSRENMIHSLSMKEIREAFQRAFLRWASVIPVSFVEVGDFEVAELKIGFYNGEHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFQATASEAAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRDKRANLNIDDIKGVQSLYGSNPNFRSEWSLESDMSANQGSKFLKPLRVEYEEFVEEKGDSWIGLQVARMCGMLILIIIVNRIINDLNEWNADFHIGKDGCEEMVISLV 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00818 405 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 146 319 - -
Spst4g00818 405 Pfam Matrixin 158 316 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Spst4g00818 405 Pfam Putative peptidoglycan binding domain 55 112 IPR002477 -
Spst4g00818 405 Gene3D Collagenase (Catalytic Domain) 47 321 IPR024079 GO:0008237
Spst4g00818 405 FunFam Metalloendoproteinase 1 46 321 - -
Spst4g00818 405 CDD ZnMc_MMP 153 316 IPR033739 GO:0008237|GO:0008270
Spst4g00818 405 PRINTS Matrixin signature 303 316 IPR021190 GO:0004222|GO:0006508|GO:0008270
Spst4g00818 405 PRINTS Matrixin signature 184 199 IPR021190 GO:0004222|GO:0006508|GO:0008270
Spst4g00818 405 PRINTS Matrixin signature 269 294 IPR021190 GO:0004222|GO:0006508|GO:0008270
Spst4g00818 405 PRINTS Matrixin signature 208 236 IPR021190 GO:0004222|GO:0006508|GO:0008270
Spst4g00818 405 PRINTS Matrixin signature 112 125 IPR021190 GO:0004222|GO:0006508|GO:0008270
Spst4g00818 405 SMART col_5 150 317 IPR006026 GO:0006508|GO:0008237|GO:0008270
Spst4g00818 405 SUPERFAMILY PGBD-like 58 122 IPR036365 -
Spst4g00818 405 PANTHER MATRIX METALLOPROTEINASE 40 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00818 Spst-Chr4 35453683 35457647 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00818 - K07999 gmx:100781237 528.094