Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00620 ATGCTGCACCATTTCAACATGAACATCTTGTTCACGTTCCTCTTAATTGTCACCACAGCATGTTTCTACGTCACTGAGTTGAAACCTCGTGGGTCGATCATAATAGCGTCATGCATGGCCATGACAATGTTATACCACCTCCTCATGAATCGACCCTGCAAAGTTTACTTGGTGGACTTTGCATGCTTCAAGCCAAGCGTGGCGTGCCTTTGCTCCAAGGAAACGTTGCTGGACAGAGCCAAGCGCGTGGGGTTTCTCTCCGACGAGAACTACAAGCTGGTGACCAAGATTCTGGACAGGTCTGGGTTGGGACCGTGGACCTATGTCCCAGAGGGGTTGTTGGAGATTCCGCCGAAGCTAACGTTGGAAGAAGCGAGGAAGGAAACGGACACAGTGCTCTTCGGAGCTGTCGATGAGCTTTTGGAGAAAACTGGGATTGAGGCGAAGGACATAGGGATTCTTGTGGTGAACTGTTGCTTGTTCAATCCCACCCCGTCGCTCTCTGATTCCATTGTTAATCGCTACAAGCTTCGTGGGAACGTTTTGGCGTACAATCTCAGTGGCATGGGGTGCAGTGCAGGGGTTCTTGCTGTTGACTTTGCCAAACAGCTCCTTCAGGCACATCCGAACTCGTACGCGCTGGTTCTGAGCACGGAAAATGAGATCTCCAGCATGTACTGGGGAAACAATCCATCCATGCTCCTCGTGAACTGCCTCTTCCGCATGGGCGGCTCCGCCGCACTCCTCTCCAGTCACGCGTCGGACCGCCGCCGCTCAAAGTACCAGCTCCTCCACACGCTCCGGACGCACGTAGGCGCCGATGACAACAGCTACACCTGCGTCTTCCAGGCTGAGGATGAGGAGAACAAGGTGGGCGTGTCGCTCTCGAAAGAGCTGATGAACGTGGCACGCGACGCGCTGAAAGTCCACATCACCTCCCTCGGACCCCTGGTCCTTCCGCTCTCGGAAAAGATAAAGTTTTTGTCAAACCTGATCGAGAGGAAGGTGCTGAAGACGAAGATCGAGTCCTACATGCCGAACTTCAAGCTGGCGTTCGAGCACTTCTGCATCCACACTGGAGGGAGGGCTGTGCTGGATCGAATGCAGAAGAGTTTGGAGCTTGAAGACTGGCACATGGAACCTTCTAGAATGACGCTGTACAGGTTCGGGAACACTTCTTCGAGCTCCGTGTGGTACGAGTTGGCGTATTGTGAGGCGAAGGGGAGGGTGAAGAAGGGTGATAGGGTGTGGCAGATGGCGTTTGGGTCGGGGTTCAAGTGCAACACTGCGGTGTGGGTTGCCTTGAACACCATAGAAGCTGGGTCTTGCAGGAGCGCGTGGAGGGATGAAATTGGTAATTTTCCCGTGAAGATTGATCCTCTCCCTGTCAAGAGTAACAAATGA 1404 0.5349 MLHHFNMNILFTFLLIVTTACFYVTELKPRGSIIIASCMAMTMLYHLLMNRPCKVYLVDFACFKPSVACLCSKETLLDRAKRVGFLSDENYKLVTKILDRSGLGPWTYVPEGLLEIPPKLTLEEARKETDTVLFGAVDELLEKTGIEAKDIGILVVNCCLFNPTPSLSDSIVNRYKLRGNVLAYNLSGMGCSAGVLAVDFAKQLLQAHPNSYALVLSTENEISSMYWGNNPSMLLVNCLFRMGGSAALLSSHASDRRRSKYQLLHTLRTHVGADDNSYTCVFQAEDEENKVGVSLSKELMNVARDALKVHITSLGPLVLPLSEKIKFLSNLIERKVLKTKIESYMPNFKLAFEHFCIHTGGRAVLDRMQKSLELEDWHMEPSRMTLYRFGNTSSSSVWYELAYCEAKGRVKKGDRVWQMAFGSGFKCNTAVWVALNTIEAGSCRSAWRDEIGNFPVKIDPLPVKSNK 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00620 467 PANTHER 3-KETOACYL-COA SYNTHASE 33 457 IPR012392 GO:0006633|GO:0016020|GO:0016747
Spst4g00620 467 Pfam FAE1/Type III polyketide synthase-like protein 48 336 IPR013601 GO:0006633|GO:0016020|GO:0016747
Spst4g00620 467 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 353 432 IPR013747 -
Spst4g00620 467 PIRSF Very_long_ch_3-ktacl-CoA_syn 3 466 IPR012392 GO:0006633|GO:0016020|GO:0016747
Spst4g00620 467 SUPERFAMILY Thiolase-like 264 432 IPR016039 GO:0016746
Spst4g00620 467 Gene3D - 109 433 IPR016039 GO:0016746
Spst4g00620 467 SUPERFAMILY Thiolase-like 39 259 IPR016039 GO:0016746
Spst4g00620 467 CDD CHS_like 50 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00620 Spst-Chr4 14107515 14111617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00620 9 465 Miscellaneous Gene Families AT1G04220 58.105 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00620 K15397 - gmx:100803579 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00620 4 14107515 14111617 Spst4g00620 4 14107515 14111617 ECH