Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00421 ATGGCTTCTTCAATGATCTCCTCCCCAGCTGTTACCATCGTTAACCGTGCCGGTGCCGGCATGGTGGCTCCATACACTGGCCTCAAGTCCTTGGCTGGCTTCCCAACCAGGAAGACCAACAATGACATCACTTCTGCTGGAAACAACGGTGGAAGAGTGCAATGCATGGAGGTGTGGCCAACAGTTGGCCTGAAGAAGTTCGAGACTCTTTCCTACCTGCCAGACCTCACTGAGCCCCAATTGGCAAAGCAAGTAGAATACCTTCTGAGGAATGGATGGATTCCTTGCTTGGAATTCGAGTTGGAGCACGGTTTCGTGTACCGTGAGAACAACAGGTCACCCGGATACTATGATGGAAGGTACTGGACCATGTGGAAGCTACCTATGTTTGGGTGCACTGATGCTACTCAGGTGTTGAAGGAGCTTCAAGAGGCCAAGACTAAACACCCCAATGGTTTCATCCGTATCATTGGATTTGACAACTATCGTCAAGTGCAGTGCATCAGTTTCATTGCCTACAAGCCACCAGGCTACTAA 537 0.5009 MASSMISSPAVTIVNRAGAGMVAPYTGLKSLAGFPTRKTNNDITSAGNNGGRVQCMEVWPTVGLKKFETLSYLPDLTEPQLAKQVEYLLRNGWIPCLEFELEHGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDATQVLKELQEAKTKHPNGFIRIIGFDNYRQVQCISFIAYKPPGY 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00421 178 PRINTS RuBisCO small subunit signature 93 108 IPR024681 -
Spst4g00421 178 PRINTS RuBisCO small subunit signature 149 175 IPR024681 -
Spst4g00421 178 PRINTS RuBisCO small subunit signature 18 35 IPR024681 -
Spst4g00421 178 PRINTS RuBisCO small subunit signature 65 91 IPR024681 -
Spst4g00421 178 PRINTS RuBisCO small subunit signature 44 62 IPR024681 -
Spst4g00421 178 PRINTS RuBisCO small subunit signature 115 144 IPR024681 -
Spst4g00421 178 Hamap Ribulose bisphosphate carboxylase small subunit [cbbS]. 65 176 IPR000894 -
Spst4g00421 178 Pfam Ribulose-1,5-bisphosphate carboxylase small subunit 2 42 IPR024680 -
Spst4g00421 178 CDD RuBisCO_small 65 175 IPR000894 -
Spst4g00421 178 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC 1 176 IPR024681 -
Spst4g00421 178 SMART RuBisCO_small_2_a 66 175 IPR000894 -
Spst4g00421 178 FunFam Ribulose bisphosphate carboxylase small chain, chloroplastic 56 178 - -
Spst4g00421 178 SUPERFAMILY RuBisCO, small subunit 56 177 IPR036385 -
Spst4g00421 178 Gene3D Ribulose bisphosphate carboxylase, small subunit 56 178 IPR036385 -
Spst4g00421 178 Pfam Ribulose bisphosphate carboxylase, small chain 67 175 IPR000894 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00421 Spst-Chr4 5270020 5270849 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00421 K01602 - gmx:547605 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00421 4 5270020 5270849 Spst4g00421 4 5270020 5270849 ECH