Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00358 ATGTCTCACACCATGAAGCAGTATCTACACCTTCGAAATTCTCATGTGACTGGTGTAATCTCTTTGATAATAATATTATTGGGAGCAGTACATGTGAAGGTAGCAGAATGTAGGGAATATGATGGATTGAACAACGTTGAATACCCTGCCATAAATTGCAGAAATCACAGTGCAGTTTTGACAGATTTTGGTGGGGTTGGTGATGGAAAAACATCGAACACGGAGGTGTTTCGATCTGCAATAAGCAAACTGAGCCAATATGCTTCAGATGGAGGTGCAGAACTTACTGTACCACCTGGCAAATGGCTAACGGGACCCTTCAATCTCACAAGCCATTTCACTCTTTTTCTCCAAAAGGATGCTGTGCTTCTTGCTTCTCAGGATGAATCAGAATGGCCCCATCTTCCTGTACTACCTTCTTATGGAAGAGGAAGAGATGCTCCTGGTGGAAGGTTTAGCAGTCTAATTTTTGGGACTAACCTCGTCGATGTTGTAATAACTGGTCAAAATGGTACAATTGATGGACAAGGATCTTATTGGTGGTACAAGTTCCGCAACAAACAATTGAAACTCACCAGACCATACATGATTGAGATCATGTACTCTGATCAAATTCAAATATCAAATCTCACTTTAGTCAATTCCCCATCTTGGTTTGTCCATCCAATTTATAGCAGTAATATAATTATACAAGGGCTTACCATTCTTGCACCAGTGACCTCTCCCAACACAGATGGAATAAACCCAGATTCATGTACAAACACTATGATTGAAGACTGCTACATCGTTTCGGGTGACGATTGCGTTGCAGTAAAAAGTGGGTGGGATGAGTATGGAATTAGATTTGGAATGCCAACCCGGCACTTAATCATTAGAAGGGTGACTTGTATATCGCCAGACAGTGCCATGGTTGCATTAGGCAGTGAAATGTCTGGTGGAATTGAAGATGTTAGAGTTGAAGATCTCACTGCCATCAACACTGAGTCAGCTGTTAGAATCAAAACAGCAGTTGGTAGAGGTGGATATGTGAAGAACATATTTGTCAGAGGATTGAAGCTGAACACCATGAAATATGTATTTTGGATGACTGGGTCTTATGGATCACATCCTGACCCTGGCTTTGACCCCAAAGCACTTCCTATTATTTCTGGAATAAATTATAGAGATGTTATAGCGAAGAACGTCACATATTCTGCAAAACTTGAAGGAATTTCTAATGACCCTTTCACAGAAATCTGCATTTCTAATGTTAATATCCAAGTGAGTGAACAACGGAAGAAGCTTCAATGGAATTGCACTGATGTTGCTGGAGTTACAAGCAATGTCACTCCTCTTCCTTGCCTATTGCTGCCAGAAAAAGGGAATTTCAATTGTCCTTTTCCAAATGACAAACTTCCCATTGAAAATGTTCGATTCAAGACATGTTCTTTGAAAACTGTCTTCTAA 1446 0.4039 MSHTMKQYLHLRNSHVTGVISLIIILLGAVHVKVAECREYDGLNNVEYPAINCRNHSAVLTDFGGVGDGKTSNTEVFRSAISKLSQYASDGGAELTVPPGKWLTGPFNLTSHFTLFLQKDAVLLASQDESEWPHLPVLPSYGRGRDAPGGRFSSLIFGTNLVDVVITGQNGTIDGQGSYWWYKFRNKQLKLTRPYMIEIMYSDQIQISNLTLVNSPSWFVHPIYSSNIIIQGLTILAPVTSPNTDGINPDSCTNTMIEDCYIVSGDDCVAVKSGWDEYGIRFGMPTRHLIIRRVTCISPDSAMVALGSEMSGGIEDVRVEDLTAINTESAVRIKTAVGRGGYVKNIFVRGLKLNTMKYVFWMTGSYGSHPDPGFDPKALPIISGINYRDVIAKNVTYSAKLEGISNDPFTEICISNVNIQVSEQRKKLQWNCTDVAGVTSNVTPLPCLLLPEKGNFNCPFPNDKLPIENVRFKTCSLKTVF 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00358 481 Gene3D - 34 444 IPR012334 -
Spst4g00358 481 PANTHER PECTIN LYASE-RELATED 27 468 - -
Spst4g00358 481 Pfam Glycosyl hydrolases family 28 156 436 IPR000743 GO:0004650|GO:0005975
Spst4g00358 481 SUPERFAMILY Pectin lyase-like 53 466 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00358 Spst-Chr4 4366362 4369731 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00358 23 477 Glycoside Hydrolase AT3G48950 67.749 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00358 - - gmx:100779166 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00358 4 4366362 4369731 Spst4g00358 4 4366362 4369731 ECH