Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g05143 ATGGTTCGCTTCAGCAACAACGTCATCGGACTCCTCAACTTCCTCACCTTCCTCCTCTCCATCCCGATCCTGGTGGCCGGAGTGTGGCTGAGCAAGCAGGGCAGCTCCGAATGCGAGCGGTGGCTGGAGAAGCCCGTGATCGCGCTCGGCGTTTTCCTCATGATCGTCTCACTCGCCGGCCTCATCGGCGCGTGCTGCCGCGTGTCGTGGCTCCTCTGGGTCTACCTCCTCGTCATGTTCTTGCTCATCGTTGTTCTCTTCGCATTCACCATCTTTGCCTTCGTTGTCACCAACAAGGGCGCTGGTGAGGTCGTGTCTAACAGAGGCTATAAGGAGTATAGGCTCGGGGATTACTCTAATTGGTTGCAGAAGAGGGTGAACAACGCTAAGACGTGGAACAAGATCAAGAGTTGCTTGCAGTCTGGGAAAGTCTGCTCTGAATTCCAATCCAAGTTTCTAAACGACACCGTTACTGAGTTCTACGCTGAGAACCTCTCCGCGCTTCAGTCTGGGTGTTGTAAGCCTGCAGATGAGTGCAATTTTACCTATCAGAATCCAACGACCTGGACAAAAACCGCAAATGCTACTCTGAACAATCCGGACTGTGATGCTTGGAATAACGACCCCAATGTTCTGTGCTTTGCCTGCCAATCATGCAAGGCTGGCTTACTGCAAAACATCAAGACTGATTGGAAGAAGGTGGCTATTGTTAACATCATAGTCCTGGTCTTCCTCATTATTGTCTACTCCATAGGCTGTTGTGCTTTCAGGAATAACAGGAAGGAGAATTGGAAGGGATATTAG 804 0.5087 MVRFSNNVIGLLNFLTFLLSIPILVAGVWLSKQGSSECERWLEKPVIALGVFLMIVSLAGLIGACCRVSWLLWVYLLVMFLLIVVLFAFTIFAFVVTNKGAGEVVSNRGYKEYRLGDYSNWLQKRVNNAKTWNKIKSCLQSGKVCSEFQSKFLNDTVTEFYAENLSALQSGCCKPADECNFTYQNPTTWTKTANATLNNPDCDAWNNDPNVLCFACQSCKAGLLQNIKTDWKKVAIVNIIVLVFLIIVYSIGCCAFRNNRKENWKGY 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g05143 267 PANTHER TETRASPANIN-8-RELATED 3 262 IPR044991 GO:0009734|GO:0016020
Spst3g05143 267 PRINTS Transmembrane four family signature 39 65 - -
Spst3g05143 267 PRINTS Transmembrane four family signature 66 94 - -
Spst3g05143 267 PRINTS Transmembrane four family signature 7 30 - -
Spst3g05143 267 ProSitePatterns Transmembrane 4 family signature. 50 72 IPR018503 GO:0016020
Spst3g05143 267 Pfam Tetraspanin family 7 255 IPR018499 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g05143 Spst-Chr3 103161243 103163306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g05143 1 263 Miscellaneous Gene Families AT2G23810 69.202 6.07e-136 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g05143 - - gmx:100819507 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g05143 3 103161243 103163306 Spst3g05143 3 103161243 103163306 ECH
Spst3g05143 3 103161243 103163306 Spst9g02434 9 57609202 57610418 PCT