Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g04847 ATGGGTAGTGGAGCTCTCGAAACGAATCGTTTAGCAAATGGGGAAGCTGAGAACAGTCTTCACAAGCAGGTTTCTCAAGCTCCTGCTGCACTCGACAACTCGCTTTCTCATGCCAATGATGCAGTTGCTGACCCTGATGTTCCTGCTAAGAGGGTCAGGCTGCAGAAGGAGTTGACCTTTCAGGATATGTATCAAAATGAGGGCGTGTTTGACGAGGATGACGAGGATGACAGTGATTGGGAGCCGTTTCAGTTACACAAGTGTGTGGAATTTGAAATCAAGAAGTGGTGCTGCAGAAATTGTACTATGGTCAACTTAGATTGCAATGAGAGTTGCTATATATGTGGGGAGCATAGGGAGTCTAAAATCCTCAGCCATGGGTTTTTTGCATCTCCTTTAGCCCAAGACGAGGACCTGATTGAAGTCCAGGGAGACGTAAAAAGACTGAAAGGTTTTAAAAATAGAAATGTGTGTAGGAAACCCAAAGTCATGGGGAGCTTGGTGTACGAATGGAGTGTGTATGGCAAAAAGAAATTTATACAGGCTGGGGTGAATGGATTCGGATCCTACTCTAGGAATGTTATAGACAAGTGTACTTGTGACATAGTGCAAGCTTATGTTGTATTTGGATTAGAGCGAGGAAAAAAGGAGGAAAGTGTGGAAAATGGTTTATGTGTGCGAAAAGTGTGGATTTTGAGGCACCTCTTCAAACAGCGTCTTTATGTTGAAAAGAAATTACCTCCACATCCTGAGAGGCCGGATCGTCTTCAAGCCATTGCTGCTAGTCTTGCTAGAGCTGGCATATTTCCTGGAAAATGCTATTCAATTCCTGCTAGAGAAATCACACCAGAAGAACTTATTATGGTTCATTCTTTGGACCATATTGAGTCTGTGGAAGTTACAACCGAATCACTTTCTAGTTATTTCACTCCTGACACATATGCGAATCAGCATTCAGCACTTGCTGCTAGGTTGGCCGCTGGGTTATGTGCTGATCTGGCATCAGCAATTGTTTCCGGACAAGCAAAAAATGGATTTGCTCTGGTTAGGCCTCCTGGTCATCATGCTGGTGTAAGACAGGCAATGGGGTTCTGCCTTCACAATAATGCTGCCGTGGCAGCATTGGCTGCTCAAGCTGCAGGGGCTAGGAAGGTGTTAATTTTGGATTGGGATGTTCATCATGGAAATGGGACACAGGAAATATTTGAACAGAACAAATCAGTCTTATATATATCATTGCATAGACATGAGGGAGGAAAGTTTTATCCTGGTACTGGAGCTGCTAAAGAGGTTGGTAGTATGGGTGCTGAAGGATACTGTGTGAATATTCCATGGAGTCGAGGAGGAGTCGGTGACAATGACTACAGTTTTGCATTTCAGCATGTCGTCCTTCCTATAGCTTATGAGTTTAACCCAGATTTTACCATAGTATCTGCGGGATTTGATGCTGCAAGAGGTGATCCCCTAGGATGTTGCGATATTACTCCCTCTGGCTATGCACACATGACGCATATGTTGAATGTCCTCTCGGGTGGAAAATTGCTTGTTATTCTTGAGGGGGGATATAATCTTCGATCTATATCATCTTCAGCAACTGCGGTAATCAAGGTATTACTGGGTGAACATCCTGGATGTGAACTGGAAAATAGTTTCCCTTCCAAAGCTGGCCTGCTAACAGTCCTGGAAGTCCTCAAAATTCAGATGAAGTTTTGGCTTTCCTTGGGTCCCATTTTTGTGAATTTGGAATCACAATGGAGGATGTATTGTTTGGGCTTGAAAATAAGTAGTCTGATTGAAATTGTGAGTTGGGACAATGGTAAATCTGGTTCGATTGATAGCTCAGTCCTATCTGAGCTTACAGTGGAAGCAAACAAATTGTTGTCTATCTTGATTCCTTGTCTGAGTTGCAATGAGCAAGAAGATGGTGATGGAATGGAAGTGTGGCAAGCATAG 1953 0.4347 MGSGALETNRLANGEAENSLHKQVSQAPAALDNSLSHANDAVADPDVPAKRVRLQKELTFQDMYQNEGVFDEDDEDDSDWEPFQLHKCVEFEIKKWCCRNCTMVNLDCNESCYICGEHRESKILSHGFFASPLAQDEDLIEVQGDVKRLKGFKNRNVCRKPKVMGSLVYEWSVYGKKKFIQAGVNGFGSYSRNVIDKCTCDIVQAYVVFGLERGKKEESVENGLCVRKVWILRHLFKQRLYVEKKLPPHPERPDRLQAIAASLARAGIFPGKCYSIPAREITPEELIMVHSLDHIESVEVTTESLSSYFTPDTYANQHSALAARLAAGLCADLASAIVSGQAKNGFALVRPPGHHAGVRQAMGFCLHNNAAVAALAAQAAGARKVLILDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGKFYPGTGAAKEVGSMGAEGYCVNIPWSRGGVGDNDYSFAFQHVVLPIAYEFNPDFTIVSAGFDAARGDPLGCCDITPSGYAHMTHMLNVLSGGKLLVILEGGYNLRSISSSATAVIKVLLGEHPGCELENSFPSKAGLLTVLEVLKIQMKFWLSLGPIFVNLESQWRMYCLGLKISSLIEIVSWDNGKSGSIDSSVLSELTVEANKLLSILIPCLSCNEQEDGDGMEVWQA 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g04847 650 PRINTS Histone deacetylase superfamily signature 472 482 IPR000286 -
Spst3g04847 650 PRINTS Histone deacetylase superfamily signature 351 374 IPR000286 -
Spst3g04847 650 PRINTS Histone deacetylase superfamily signature 384 399 IPR000286 -
Spst3g04847 650 FunFam Histone deacetylase 15 227 584 - -
Spst3g04847 650 SUPERFAMILY Arginase/deacetylase 234 553 IPR023696 -
Spst3g04847 650 ProSitePatterns Zinc finger RanBP2-type signature. 96 115 IPR001876 -
Spst3g04847 650 Pfam Histone deacetylase domain 249 537 IPR023801 -
Spst3g04847 650 PANTHER HISTONE DEACETYLASE 9-RELATED 247 575 IPR017320 GO:0000118|GO:0004407|GO:0006325|GO:0016575
Spst3g04847 650 MobiDBLite consensus disorder prediction 1 31 - -
Spst3g04847 650 Gene3D Histone deacetylase domain 232 576 IPR037138 -
Spst3g04847 650 MobiDBLite consensus disorder prediction 12 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g04847 Spst-Chr3 100214939 100224331 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g04847 - - cit:102616223 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04847 3 100214939 100224331 Spst3g04847 3 100214939 100224331 ECH